Conserved Protein Domain Family
RRM1_NEFsp

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cd12273: RRM1_NEFsp (this model, PSSM-Id:240719 is obsolete and has been replaced by 409716)
RNA recognition motif 1 in vertebrate putative RNA exonuclease NEF-sp
This subfamily corresponds to the RRM1 of NEF-sp., including uncharacterized putative RNA exonuclease NEF-sp found in vertebrates. Although its cellular functions remains unclear, NEF-sp contains an exonuclease domain and two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), suggesting it may possess both exonuclease and RNA-binding activities.
Statistics
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PSSM-Id: 240719
Aligned: 6 rows
Threshold Bit Score: 103.661
Created: 20-Sep-2011
Updated: 1-Feb-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q96IC2       506 TVYAGPFsknCNLRALKRLFksFGPVQSMTFVLETr---------qPHLCIQYEVLEAAQLAIESLDGilVDGICIKVQR 576 human
NP_001006573 509 TIYAGPFeedFCLKSVKKEFgkCGPIQSLTVVTETy---------qPYVCIQYGVLEAAQLAVESLNGaeVAGSCIKVQR 579 chicken
NP_001121457 535 TVFAGPFeksFCLQSVRRVFrtCGPIKSLKVLSQTy---------qPYISVEYIILEAAQLAVETLDGahIDGHCIKVQR 605 western clawed ...
XP_003457807 411 VVLAGPFptgFSDGDVKQLFsfCGTVRKVTMLNTVv---------rVHAEIEFELLEGAMLAVKTLNGlnVLGQTIKVQR 481 Nile tilapia
Q9HEQ9        45 RVFVGRLstsTKKSEIRSLFetVGTVRKVTIPFRRvrrgt-rlvpsGIAFVTFNNQEDVDKAIETLNGktLDDREIVVQK 123 fission yeast
Q9UT83        21 SIYVGNLpstCQSSDLHELFepFGNFSKFHMLSRKknkstdsksptLFAFITFENKCSADNAIASLNGssFQGNTLKVEY 100 Schizosaccharom...
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