2CPF


Conserved Protein Domain Family
RRM5_RBM19_like

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cd12318: RRM5_RBM19_like (this model, PSSM-Id:240764 is obsolete and has been replaced by 409757)
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RNA recognition motif 5 in RNA-binding protein 19 (RBM19 or RBD-1) and similar proteins
This subfamily corresponds to the RRM5 of RBM19 and RRM4 of MRD1. RBM19, also termed RNA-binding domain-1 (RBD-1), is a nucleolar protein conserved in eukaryotes involved in ribosome biogenesis by processing rRNA and is essential for preimplantation development. It has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains).
Statistics
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PSSM-Id: 240764
Aligned: 30 rows
Threshold Bit Score: 93.8232
Created: 13-Sep-2011
Updated: 1-Feb-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2CPF_A          6 SGLFIKNLNFsTTEETLKGVFSkvg--aikSCTISKKKNKagvl-------------lsmGFGFVEYKKpEQAQKALKQL 70   house mouse
XP_001350574  861 ASIYIKNINFnTKEEDLKNLFDkme--gfiTCNIVKSKKVilqkdkesnkisnqyntvssGYGFAEFKNkELAMEAIKRL 938  Plasmodium fa...
EEA08353      600 TCIFIKGLNFkTSEDCLLKIFGnin--gfrKSTIIKKTVNkddnq----------iklsmGYGFLEFDTiENARECIKKM 667  Cryptosporidi...
EEB02667      786 VSLFVKNVNFcTSEATLNDVFAgcpg-lrrTILMVKKKAVsssaaeaten-gdaqtllsmGYAFVEFDSaENALAACKRM 863  Toxoplasma go...
EED93326      653 QTIYVKNLNFnTSEDELKRQFTsvgf-vprAVKIPTKAAPmkkqspadd---setklvsmGYGFVEFVSeEEAKKAMKSL 728  Thalassiosira...
EAS00521      541 KILYIKNLSFnTTESTLQSLFEkakvgtirSVKIVKNKGQs------------------qGYGFVEFSDhEAVIKSIKKL 602  Tetrahymena t...
EGR30188      200 RVVYIKNLDFsVQETELKEFFEkqnlgeikAVKIIKKNNNs------------------qGYGFVEYKNsSAVQECIKRL 261  Ichthyophthir...
EGZ26394      550 HTICVKNLNFtTKEAALEKIFErcg--klrKVTVARRKDPkrgm-------------lsmGFGFVEYVDaKHTERALQTL 614  Phytophthora ...
XP_655058     504 KTLYVKNISFkTKEDVIRKVFEkcg--rvlAITLSKTKDKkve--------------knsGFGFVEYAKhEDAINAIKTL 567  Entamoeba his...
XP_002679199  541 TVLFIKNLNFkTTEDSLRELFKsyn---prSVRIVVENGKs------------------kGFGFAEFNNvKEAVKAHEEL 599  Naegleria gru...
2CPF_A         71 qghtVDGHKLEVRIS 85   house mouse
XP_001350574  939 tgtrLNDHLLEMSLS 953  Plasmodium falciparum 3D7
EEA08353      668 qgtvIDDHIIQLSMS 682  Cryptosporidium muris RN66
EEB02667      864 qgvvVDDHVLQISIS 878  Toxoplasma gondii ME49
EED93326      729 qgklVDGHSLDIKLS 743  Thalassiosira pseudonana CCMP1335
EAS00521      603 qnslLDGHSIQLSVS 617  Tetrahymena thermophila
EGR30188      262 qnslFQGRCLHLSVS 276  Ichthyophthirius multifiliis
EGZ26394      615 qntvVDGHALNLKLS 629  Phytophthora sojae
XP_655058     568 qgkvIDGHAVQIEIS 582  Entamoeba histolytica HM-1:IMSS
XP_002679199  600 hnaqLDNHILVIHYS 614  Naegleria gruberi strain NEG-M
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