2LMI


Conserved Protein Domain Family
RRM1_GRSF1

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cd12730: RRM1_GRSF1 (this model, PSSM-Id:241174 is obsolete and has been replaced by 410129)
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RNA recognition motif 1 in G-rich sequence factor 1 (GRSF-1) and similar proteins
This subgroup corresponds to the RRM1 of GRSF-1, a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which are responsible for the RNA binding. In addition, GRSF-1 has two auxiliary domains, an acidic alpha-helical domain and an N-terminal alanine-rich region, that may play a role in protein-protein interactions and provide binding specificity.
Statistics
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PSSM-Id: 241174
Aligned: 4 rows
Threshold Bit Score: 144.565
Created: 21-Sep-2011
Updated: 1-Feb-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2LMI_A        11 VFLIRAQGLPWSCTMEDVLNFFSDCrIRNGENGIHFLLNRDGKRrGDALIEMESeQDVQKALEKHrmYMGQRYVEVYEI 89  human
NP_001039317  36 LFIVQAKGLPWSCTAEDIMSFFSECrIRGGVNGVHILYNKYGKPsGQAFIELEHeEDVGKALDQHrhYPRDRLIEVREV 114 zebrafish
XP_420600     89 VFLIRAHGFPFACTKKEMMAFFDSCkIRNGENGIHFLLNRDGRRrGDALIELESkADVQKALEKNlrYMGTRYVKVHEI 167 chicken
AAI60694       1 MFIVRVRGLPWSCTADDVLNFFDDSnVRNGTDGVHFIFNRDGKPrGDAVIEFESaEDVQKAVEQHkkYMGQRYVEVFEM 79  African clawed frog
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