1L6N


Conserved Protein Domain Family
Gag_p17
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pfam00540: Gag_p17 
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gag gene protein p17 (matrix protein)
The matrix protein forms an icosahedral shell associated with the inner membrane of the mature immunodeficiency virus.
Links
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Statistics
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PSSM-Id: 249943
Aligned: 4 rows
Threshold Bit Score: 220.581
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1L6N_A   2 GARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNT 81 
P03349   2 GARASVLSGGELDKWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNT 81  HIV-1 M:B_ARV2/SF2
P27972   2 GAATSALNRRQLDEFEHIRLRPNGKKKYQIKHLIWAGKKMDRFGLHEKLLETEEGCKKIIEVLSPLEPTGSEGMKSLYNL 81  Simian immunodeficien...
P17282   2 GARASVLTGGKLDRWEKVRLRPGGRKRYMMKHLVWASRELERFACDPGLMESKEGCTKLLQQLEPALKTGSEGLRSLFNT 81  SIVcpz GAB1

1L6N_A  82 IAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKK--------AQQAA--AdTGNNSQVSQNY 132
P03349  82 VATLYCVHQRIDVKDTKEALEKIEEEQNKSKKK--------AQQAAaaAgTGNSSQVSQNY 134 HIV-1 M:B_ARV2/SF2
P27972  82 VCVLLCVHQEKKVKDTEEALAIVRQCCHLVDKektavtppgGQQKNntGgTATPGG-SQNF 141 Simian immunodeficiency virus (AGM155 IS...
P17282  82 LAVLWCIHSDITVEDTQKALEQLKRHHGEQQSKtesn-sgsREGGAsqG-ASASAGISGNY 140 SIVcpz GAB1
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