Conserved Protein Domain Family
Herpes_IR6
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pfam06307: Herpes_IR6 
Herpesvirus IR6 protein
This family consists of several Herpesvirus IR6 proteins. The equine herpesvirus 1 (EHV-1) IR6 protein forms typical rod-like structures in infected cells, influences virus growth at elevated temperatures, and determines the virulence of EHV-1 Rac strains.
Links
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Statistics
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PSSM-Id: 253668
Aligned: 4 rows
Threshold Bit Score: 270.26
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
AMB16503  52 SQEPRKYLFNPYKYMLGRPYFRRCREEMNEGYFAKVPEGYFPVGPSEMPGRVPVES-----KVDGEVLSFKALPPPKFEK 126
Q6LAQ8    54 PRGERKHLFNPFGCMLGRSYFRRCREEMNEGYFAKVPTGYFPVAPSEVPCRVPVEG-----VVAGEVLSYSALPLPKIEK 128 Equine herpesvirus ...
Q6X204    25 ASAAADAGPGRDGGPVGWRLFRACRNEHEDGLYAMLPPDYFPVMPSTKPLLVKVPApglspDRAGGAVHFECVPAPRRPV 104 Bovine alphaherpesv...
O41520     1 MSASFALFDNNSDQANMPSYFRRCRGELNEGFYAQVPPGYFPVRPKTTPALARVKN-------QGEPHAFTIVPTPPTDV 73  Canid alphaherpesvi...

AMB16503 127 RFYKQLDDGTFVRLPFLYPEEYYEGENQPSETLYYIRADTKDAYS----VDPSDLLEEAFAEVPKWLE-EEMSNWTGPKK 201
Q6LAQ8   129 RFYKQLNDGTFVRLPFLYPEVYYEGEEEPADERYYIRADAADASS----ADPSTLPEEAFAKVPPAIA-EGITNWQGPKR 203 Equine herpesvirus ...
Q6X204   105 QFFRQLYDGTFVRLPHNFPDECYEDE-APLADRFYLNADVDLQSL------PAGNMSQYFTRLPDAFQrELRARVPAPAR 177 Bovine alphaherpesv...
O41520    74 RFFKKLRDGTFVKLPFSYPDERYEDDIEPMYCRLYVLKDFETPSSpynqVNASQLME-----VPSSLV-ESKCYWDGPKF 147 Canid alphaherpesvi...

AMB16503 202 LPIPSRRYVLKHGWE--FQSNVTEDAFQEINTTFLRLDLQGEPkqhtrnaqqssigdqvlDAHPRDAQQPKNGNSVDKN 278
Q6LAQ8   204 IPIPSERYVMKLGFE--YQLHVTEDAFQEVNTSFMRLDLQSSP-----------------DPHPRGARQPRSRAHVSAE 263 Equine herpesvirus t...
Q6X204   178 TPLPHRRYVLRLGLErvAGERFTEDCFEPIDTRLLRLERAPGEpp-------------rrGPPQPPAGPGPRRARVRAG 243 Bovine alphaherpesvi...
O41520   148 INVPPIRYILKSDYS--LN-NVSEDAFVLVDTRKLKLE----------------------------------------N 183 Canid alphaherpesvir...
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