2DV6,1N70,1KBW,1KBW,1AS7


Conserved Protein Domain Family
CuRO_1_CuNIR

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cd11020: CuRO_1_CuNIR 
Click on image for an interactive view with Cn3D
Cupredoxin domain 1 of Copper-containing nitrite reductase
Copper-containing nitrite reductase (CuNIR), which catalyzes the reduction of NO2- to NO, is the key enzyme in the denitrification process in denitrifying bacteria. CuNIR contains at least one type 1 copper center and a type 2 copper center, which serves as the active site of the enzyme. A histidine, bound to the Type 2 Cu center, is responsible for binding and reducing nitrite. A Cys-His bridge plays an important role in facilitating rapid electron transfer from the type 1 center to the type 2 center. A reduced type I blue copper protein (pseudoazurin) was found to be a specific electron transfer donor for the copper-containing NIR in bacteria Alcaligenes faecalis.
Statistics
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PSSM-Id: 259906
Aligned: 43 rows
Threshold Bit Score: 152.365
Created: 30-Jan-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Type 1 (T1) CuType II Cutrimer
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: Type 1 (T1) Cu binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:H C H MClick to see conserved feature residue pattern help
Evidence:
  • Structure:1N70; Rhodobacter sphaeroides nitrite reductase binds copper through a Type 1 (T1) copper site.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
2DV6_A       163 TVRIDLETVEVKGQLddnTTYTYWTFNGkVPGPFLRVRVGDTVELHLKNHKd---------------------------- 214 Hyphomicrobium ...
1N70_A        30 INEFEMRIIEKEVQLdedAYLQAMTFDGsIPGPLMIVHEGDYVELTLINPPe---------------------------- 81  Rhodobacter sph...
YP_001817907 258 SVGVTLIATDTTVEIangVQYNAWTFNGtVPGPVLHVRQGQTVNVTFVNRG----------------------------- 308 Opitutus terrae...
YP_872262    216 VHKVTWHIRDVVTTVapgVTQTLWTFDGrVPGPTLRGRVGDTFEVTVVNDT----------------------------- 266 Acidothermus ce...
YP_290850    209 EHEVEIRVTETELEVapgVRQSVWTFGGdVPGPVLRGKVGDVFTVTFVNDG----------------------------- 259 Thermobifida fu...
ADE28552     256 SVAVDIAVSDQSVEIasgVQYQAWTFGKsVPGPVIHVRQGQTVNVKLTNHG----------------------------- 306 Rhodanobacter s...
AAV81603      80 THDIRMDVFSQKIEVapgVTYSAWTFGGsVPGPVLHVREGDRVIFKMKNRSdeevtitkpvkngapfiqqlqangyqnnq 159 Idiomarina loih...
BAC17082     209 VHEYSWDITEEVRQVapgHEQVVWLFDGqAPGPTLRGRLGDTFRITLHNKG----------------------------- 259 Corynebacterium...
NP_940213    183 THEATFTVSEVPLEVapgVWQTRWTFNGsGVGPTLHGKVGDKFRITLVNNG----------------------------- 233 Corynebacterium...
YP_105511    131 DQAIRLDTTHTVIRIapgIAFAAWTFGNqVPGPTVHVKVGDRVRLSMTNRSdepapg---------------------gl 189 Burkholderia ma...
Feature 1               #                                        #         #    #         
2DV6_A       215 ---sLMVHSVDFHGATGPGgaaaFTQTDPGEETVVTFKALIPGIYVYHCATPsv--ptHITNGMYGLLLVEPE 282 Hyphomicrobium denitri...
1N70_A        82 ---nTMPHNIDFHAATGALggggLTLINPGEKVVLRFKATRAGAFVYHCAPGgpmipwHVVSGMAGCIMVLPR 151 Rhodobacter sphaeroides
YP_001817907 309 ----HMPHSIDFHAAEVAPsv-aYRTIAVGETLQFSFLARTAGAFVYHCGTPpv--llHMGNGMYGVIIVDPA 374 Opitutus terrae PB90-1
YP_872262    267 ----SMTHNLDFHAESGPPae-vMTPIPPGGRHTYTFVARYAGAWLYHCGTApm--lmHVANGMYGALIIDPP 332 Acidothermus celluloly...
YP_290850    260 ----TMGHGIDFHASSLAPde-pMRTINPGERLTYRFRAEKAGAWVYHCSTSpm--lqHIGNGMYGAVIIDPP 325 Thermobifida fusca YX
ADE28552     307 ----TMQHSIDFHSAITPPsl-hYVDIMPGESIAFSFVAKVPGAFLYHCGTPpv--llHIGNGMYGAIIVDPA 372 Rhodanobacter sp. 2APBS1
AAV81603     160 pvvnPMPHSMDFHSGTVAAed-kWRTISPGETIEFEWIANYAGTYMYHCGTSsv--lmHTAMGQYGAVVVSPK 229 Idiomarina loihiensis ...
BAC17082     260 ----TMDHSIDFHAGEVNPdt-nMAQTPVGESLTYEFVANRYGIWMYHCATApm--slHIANGMFGAVIIDPP 325 Corynebacterium effici...
NP_940213    234 ----TIGHSIDFHAGELAPde-kMRTIGPGESLIYEFTAGRAGIWMYHCSTMpm--aaHIAAGMHGAVVIEPV 299 Corynebacterium diphth...
YP_105511    190 qltaPMMHSMDFHTAMVSPtd-kYRSIAPGQTMHFEFTPNYPGVFMYRCGTPrv--leHIASGMYGVVVVAPR 259 Burkholderia mallei AT...

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