3GDC


Conserved Protein Domain Family
CuRO_1_2DMCO_NIR_like

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cd11024: CuRO_1_2DMCO_NIR_like 
Click on image for an interactive view with Cn3D
The cupredoxin domain 1 of a two-domain laccase related to nitrite reductase
The two-domain laccase (small laccase) in this family differs significantly from all laccases. It resembles the two domain nitrite reductase in both sequence and structure. It consists of two cupredoxin domains and forms trimers and hence resembles the quaternary structure of nitrite reductases more than that of large laccases. There are three trinuclear copper clusters in the enzyme localized between domains 1 and 2 of each pair of neighbor chains. Three copper ions of type 1 lie close to one another near the surface of the central part of the trimer, and, effectively, a trimeric substrate binding site is formed in their vicinity. Laccase is a blue multi-copper enzyme that catalyzes the oxidation of a variety of organic substrates coupled to the reduction of molecular oxygen to water. It displays broad substrate specificity, catalyzing the oxidation of a wide variety of aromatic, notably phenolic, and inorganic substances. Laccase has been implicated in a wide spectrum of biological activities.
Statistics
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PSSM-Id: 259910
Aligned: 22 rows
Threshold Bit Score: 157.432
Created: 31-Jan-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: Type 1 (T1) Cu binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:H C HClick to see conserved feature residue pattern help
Evidence:
  • Structure:3GDC; Arthrobacter sp. FB24 2 domain Multicopper Oxidase binds to copper at T1 center.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                    #                   
3GDC_A        34 LREWDIVAVDKDfeIAPGIIFKGWSYNGr-----IPGPTLWAREGDALRIHFTNAG-AHPHTIHFHGVHRAtmdgtp--- 104 Arthrobacter sp...
YP_006776076  44 THNFTVIAEDTTleIAPGIRVEAWTYNGt-----IPGPTLRATEGDRVIINFINNG-KLPHTMHFHGDHNEkndg----- 112 Candidatus Nitr...
YP_006862636  17 HREYTLVAEDAEleIAPGEVVKPWTFNGt-----MPGPTLRFTEGDNVTIHFINKT-PLIHTVHFHGNHDEkndg----- 85  Candidatus Nitr...
YP_001582688  51 TLSYTLIAQDAEieVSPGVRAKVWTYNGt-----VPAPTLRFSEGDDVTVKFVNDT-PYAHTIHFHGTHDSandg----- 119 Nitrosopumilus ...
YP_007116730  86 VREFRLEANTSIvqLNSAVTFNTWNVNNr-----VPGPTLRATEGDRIRVIFSNKG-GHSHSLHFHGIHPTemd------ 153 Oscillatoria sp...
BAJ46613      42 VREYTIVIEPADieLAPGVVWHAWTYNGt-----IPGPTLYAKVGDLIRVRAINKL-NLTHSLHPHLPYYDlqhdgsqvn 115 uncultured cren...
YP_002786033  52 VRNFTLEVHRIQaeIAPGVNVEQWAFGFpghkprVPGPEIRVRQGDLVRLTLRNTF-DQPHTIHPHGIISVaqrm----- 125 Deinococcus des...
YP_004169764  61 QREFTLEVHKITteIAPGVNVEQWAYSFpgqkptVPGPEIRVQQGDHVTIHFKNTH-DQPHTVHLHGVARLaqqm----- 134 Deinococcus mar...
YP_003177787  71 TVASKHMVHPEEtmGGPVELPKVWAFQAddgepsVPGPILRTTEGEDMEVTLDNTDaNMPHTLHFHGVRKTwendgv--- 147 Halomicrobium m...
YP_001840366 107 VKDFSLNLFPLSvnIAHNVNYQAWTFDGv-----VPGPILRANLGDKLRIHVKNSS-PDPHSLHFHGTHDPmed------ 174 Leptospira bifl...
Feature 1                                        #           #              
3GDC_A       105 ----gigagSIAPGQSFTYEFDATPFGTHLYHCHQSPLAp----HIAKGLYGGFIVEPK 155 Arthrobacter sp. FB24
YP_006776076 113 ------vfqEVLPGESYIYDFVAEPAGTFMYHCHVMPVSe----HVRNGLYGAFIVDPK 161 Candidatus Nitrosopumilus sp. AR2
YP_006862636  86 ------vlpQIIPAENYTYNFIADPAGAFMYHCHAYPTSl----HIRMGMYGSIIVDPK 134 Candidatus Nitrososphaera gargensis ...
YP_001582688 120 ------vfpMIMPGEEYTYHFVAEEAGLFMYHCHAFPTSe----HVRMGMFGTMIIDPA 168 Nitrosopumilus maritimus SCM1
YP_007116730 154 ------gvkPVRNGSVFIYEFDANPYGVHLYHCHIAPVTr----HIGKGLYGMFIIDPP 202 Oscillatoria sp. PCC 7112
BAJ46613     116 iitgvgkgsMIPPGGEWVYEWPATKAGIWYYHCHSADGGlrivdHMLMGLYGAIIVDEI 174 uncultured crenarchaeote 10-H-08
YP_002786033 126 -----dgldEVLPGQSFTYEFVATEAGTFAYHCHFQTNL-----HLNMGMYGALIVEPA 174 Deinococcus deserti VCD115
YP_004169764 135 -----dgltDVMPGEEALYEFVATDPGTFAYHCHYQTYL-----HADMGMYGAIVVEPR 183 Deinococcus maricopensis DSM 21211
YP_003177787 148 ---ptttgiTVNPGEKHTYEIPANVPGTHLYHCHYQTQR-----HIDMGMYGIFRVDPK 198 Halomicrobium mukohataei DSM 12286
YP_001840366 175 ------gwePIPAFGERTYEIEAGPVGLHPYHCHVPPLMv----HTAKGLYGALLVDPP 223 Leptospira biflexa serovar Patoc str...

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