2C9L,2C9L


Conserved Protein Domain Family
bZIP_AUREO-like

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cd14809: bZIP_AUREO-like 
Click on image for an interactive view with Cn3D
Basic leucine zipper (bZIP) domain of blue light (BL) receptor aureochrome (AUREO) and similar bZIP domains
AUREO is a BL-activated transcription factor specific to phototrophic stramenopiles. It has a bZIP and a BL-sensing light-oxygen voltage (LOV) domain. It has been shown to mediate BL-induced branching and regulate the development of the sex organ in Vaucheria frigida. bZIP factors act in networks of homo and heterodimers in the regulation of a diverse set of cellular processes. The bZIP structural motif contains a basic region and a leucine zipper, composed of alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization of leucine zippers creates a pair of the adjacent basic regions that bind DNA and undergo conformational change. Dimerization occurs in a specific and predictable manner resulting in hundreds of dimers having unique effects on transcription. This subgroup also includes the Epstein-Barr virus (EBV) immediate-early transcription factor ZEBRA (BZLF1, Zta, Z, EB1). ZEBRA exhibits a variant of the bZIP fold, it has a unique dimer interface and a substantial hydrophobic pocket; it has a C-terminal moiety which stabilizes the coiled coil involved in dimer formation. ZEBRA functions to trigger the switch of EBV's biphasic infection cycle from latent to lytic infection. It activates the promoters of EBV lytic genes by binding ZEBRA response elements (ZREs) and inducing a cascade of expression of over 50 viral genes. It also down regulates latency-associated promoters, is an essential replication factor, induces host cell cycle arrest, and alters cellular immune responses and transcription factor activity.
Statistics
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PSSM-Id: 269871
Aligned: 40 rows
Threshold Bit Score: 49.1661
Created: 18-Dec-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:2C9L: Human Epstein-Barr virus (EBV) immediate-early transcription factor ZEBRA bZIP domain homodimer bound to DNA, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          # ### ###### ###                                
2C9L_Y       2 LEIKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLLKQMCPSLD 53   Epstein-Barr virus
2C9L_Z       2 LEIKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLLKQMCPSLD 53   Epstein-Barr virus
EFJ40796   791 SWQRRERNRLAARKCRAKKMEFIAHMQAQLDAMAARNEELRVQLVALQRMYS 842  Volvox carteri f. nagariensis
EFJ52037   443 ARERREKNRIAARKCRAKKVAMVRGMQEELKELVAQNQEMKMQVVTWHRMFS 494  Volvox carteri f. nagariensis
NP_733896  180 QERKRYRNRLASRRCRAKFRNQLEHFRTVAAAKTEENNRLRVLIRQMCPTLD 231  Marmoset lymphocryptovirus
EGI57671   470 PKTRKEKNKLASRACRLKKKAQHEANKIKLHGLETEHRRLIQGISQAKHTLA 521  Panamanian leafcutter ant
EDN93540   229 REKYLEKNRRAARKCRLKKKAEMAADQAKYDHYVSELRATKKQLEDSRKELL 280  Sclerotinia sclerotiorum 1980 UF-70
BAH80323    62 KEKRKERNKLLARKSRMKLKADLENLKAKLMYLMKENESLRSQLYRVSTPPV 113  Ochromonas danica
EGB06531   755 TALERERNREHARNTRARKKEAIEKLKHDVEAWEVETRRTEERRAVKERKSE 806  Aureococcus anophagefferens
EGB08768    70 AELTRRRNRENARSTRMRRKMYIKHLQQVAETLKERHDELNSKMAAPPPDGY 121  Aureococcus anophagefferens

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