4D0N,2WM9,3CON


Conserved Protein Domain Family
small_GTP

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TIGR00231: small_GTP 
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small GTP-binding protein domain
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. [Unknown function, General]
Statistics
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PSSM-Id: 272973
Aligned: 16 rows
Threshold Bit Score: 128.258
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4D0N_A         6 RKKLVIVGDGACGKTCLLIVFSKDQ-FPEVYVP---TVFENYVAD-IEVDGKQ------------VELALWDTAG---QE 65  human
BAA87880      11 LFKVVLIGDSGVGKSNLLSRFTRNE-FNLESKS---TIGVEFATRsIEVDGKT------------IKAQIWDTAG---QE 71  fruit fly
O51461         4 YKKVLIVGRPNVGKSALFNRILDTKrSITESTY---GVTRDLVEEvCKVDS--------------FKFKLIDTGGf--TI 64  Borrelia burgdo...
P53364       222 GVALVLAGSVNAGKSSLFNLFLKKDrSIVSSYP---GTTRDYIEAsFELDG--------------ILFNLFDTAGl--RD 282 Borrelia burgdo...
O51461       173 DIKVGIIGKPNSGKSTLINYLSGNEiAIVSDQP---GTTRDFIKTkFTRNG--------------KVFEVVDTAGirrRA 235 Borrelia burgdo...
AAA92441       8 CGFIAIVGRPNVGKSTLLNKLLGRKiSITSRKA---QTTRHALSVcHTEDP--------------YQAIYVDTPGlhmEE 70  Salmonella ente...
P09757         3 IINIGVLAHVDAGKTTLTESLLYNSgAITELGSvdkGTTRTDNTLlERQRGITiqtgitsfqwenTKVNIIDTPG---HM 79  Ureaplasma urea...
P32233        64 DARIGFVGFPSVGKSTLLSNLAGVY-SEVAAYE---FTTLTTVPGvIRYKG--------------AKIQLLDLPG---II 122 house mouse
3CON_A        21 eyklvvvgaggvgKSALTIQLIQNH-FVDEYDP---TIEDSYRKQvV-IDGET------------CLLDILDTAG---QE 80  human
WP_003225785  10 TRNIGIMAHIDAGKTTTTERILFYTgRIHKIGEtheGASQMDWMEqEQERGITitsaattaqwkgYRVNIIDTPG---HV 86  Bacillus subtilis
4D0N_A        66 DYdrlr-plsYPDTDVILMCFSIDSP-DSLENIPEKWTPEVKHFCP--N-VPIILVGNKKDLRN---------DEHTRRE 131 human
BAA87880      72 RYrait-sayYRGAVGALLVYDIAKH-LTYENVE-RWLRELRDHADq-N-IVIMLVGNKSDLRHlr-----svPTDEAKL 141 fruit fly
O51461        65 LKdeis-kivVQKVLSSLEKVDLILLvLDINEILLEDYQIIERLRKy-S-SKVVLVLNKVDTKD---------KECLAHE 132 Borrelia burgdo...
P53364       283 ADnfve-rlgIEKSNSLIKEASLVIYvIDVSSNLTKDDFLFIDSNKs-N-SKILFVLNKIDLKInk-----stEEFVRSK 354 Borrelia burgdo...
O51461       236 RVneiveyysVNRALKVIDMVDIVFLlIDVQEKLTSQDKKIAHYVTkkG-KGIVIVFSKWDLVDeskgyfealKSHVKFF 314 Borrelia burgdo...
AAA92441      71 KRlain-rlmNKAASSSIGDVELVIFvEGTRWTP-DDEMVLNKLRDg-K-APVILAVNKVDNVQekv----dlLPHLQFL 142 Salmonella ente...
P09757        80 DF--------LAEVYRSLSVLDGAILlISAKDGVQAQTRILFHALRkmG-IPTIFFINKIDQNGid------lSTVYQDI 144 Ureaplasma urea...
P32233       123 EGakdg-kgrGRQVIAVARTCNLILIvLDVLKPL-GHKKIIENELE--G-FGIRLNSKPPNIGF---------KKKDKGG 188 house mouse
3CON_A        81 EYsamr-dqyMRTGEGFLCVFAINNS-KSFADINL-YREQIKRVKDs-DdVPMVLVGNKCDLPTrt------vDTKQAHE 150 human
WP_003225785  87 DF--------TVEVERSLRVLDGAVAvLDAQSGVEPQTETVWRQATtyG-VPRIVFVNKMDKIGad------fLYSVGTL 151 Bacillus subtilis
4D0N_A       132 LAKMKQEP-VKPEEGRDMANRIGAFGYMEC 160 human
BAA87880     142 FAERNGLS-FIETSALDSTNVETAFQNILT 170 fruit fly
O51461       133 FHNLGFKR-YFLVSAAHCRGITKLRDFLKV 161 Borrelia burgdorferi B31
P53364       355 VLNSSN---LIMISTKNLEGIDILYDKIRA 381 Borrelia burgdorferi B31
O51461       315 FPILNFAP-IFRISVHKRIGLDSLFKESFK 343 Borrelia burgdorferi B31
AAA92441     143 ASQMNFPD-IVPISAETGMNVDTIAGIVRK 171 Salmonella enterica subsp. enterica serovar Typhimurium
P09757       145 KEKLSAEI-VIKQKVELYPNMC-VTNFTES 172 Ureaplasma urealyticum
P32233       189 INLTATCP-QSELDAETVKSILAEYKIHNA 217 house mouse
3CON_A       151 LAKSYGIP-FIETSAKTRQGVEDAFYTLVR 179 human
WP_003225785 152 RDRLQANAhAIQLPIGAEDNFEGIIDLVEN 181 Bacillus subtilis
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