Conserved Protein Domain Family
SF-CC1

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TIGR01622: SF-CC1 
splicing factor, CC1-like family
This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Statistics
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PSSM-Id: 273721
Aligned: 4 rows
Threshold Bit Score: 515.624
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAL32373  49 RSKSKERKRSRD-------RERKKSKSRERKRSRSKERRRSRs-RSRDRrf---rgRYRSPYSGPKFNSAIRGKIGLPHS 117 house mouse
BAB09409  71 GKRDRERERHRSsr----dKDRERDKVREGSRDKESDRERSS--KERDR-------SDRDKPRDRERREREKRSSSRSRR 137 thale cress
AAD22102  69 RYRDRSSGRLRNssseagrDTPRSDAGSHRSRRRSRSRDSGRhsRr---------hRDGDYYRGRRGRSRSRSPNRYYRP 139 Neurospora crassa
EWC74777 367 KRRDRERERDRDrdr-drdRDRDRDRDRDRDRDRDRDREREKd-KDRDRdhdryrdRERDRYRDRERERRKDRERERERE 444 Plasmodium falcipar...
AAL32373 118 IKLs--rR--RSRskspfRKDKSPVREPi-------DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVG-KVRDVRMI 185 house mouse
BAB09409 138 EEK----EpeVVE-----RGSRRHRDKKd-------EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAG-KVRDVRLI 200 thale cress
AAD22102 140 RGDrr-dRgdSYRr---rDDDRRSGRNTprardgtpQPLTEDERDRRTVFVQQLAARLRTRELKEFFEKVG-PVAEAQIV 214 Neurospora crassa
EWC74777 445 REKerirRenERErlrkeRELERERREKireerrlkEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAgKVRDIQCI 524 Plasmodium falcipar...
AAL32373 186 SDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQ------KgsagpMRLYVGSLH- 258 house mouse
BAB09409 201 MDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGgt---gPa---dRKLYVGNLH- 273 thale cress
AAD22102 215 KDRVSNRSKGVGYVEFKNEDSVQAALQLTGQKLLGIPVIVQLTEAEKNRQVR-TTETSgh---hPnsipfHRLYVGNIH- 289 Neurospora crassa
EWC74777 525 KDQRSGKSKGVAYVEFYTQEAVIKALAANGMMLKNRPIKIQSSQAEKNRAAKAAKHQPidpndiP-----LKLYIGGLLg 599 Plasmodium falcipar...
AAL32373 259 --FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPMKVGH----VTERTD 331 house mouse
BAB09409 274 --FNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGkLEIAGRTIKVSSvs-dHIGTQD 350 thale cress
AAD22102 290 --FSITEQDLQNVFEPFGELEFVQLQKDDNG-RSRGYGFVQFRDAGQAREALEKMNG-FDLAGRPIRVGLgndkFTPEST 365 Neurospora crassa
EWC74777 600 plSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNG-MEVAGREIKVGYaq-dSKYLLA 677 Plasmodium falcipar...
AAL32373 332 AssASSFLDs------DELERTGIDLGTTGRLQLMARLAEGt-------gLQIPPAAQqalqmSGSLAFGAVAeFSFvid 398 house mouse
BAB09409 351 S--APKSADf------DDDDGGGLALNAQSRAMLMQKLDRSgiatsivgsLGVPGLNG-----AAFNQPGMNP-SFP--- 413 thale cress
AAD22102 366 AnlLQRFQGqnhhqqfQGSAFSGAGGRGPATSNFDRAGARDnekg--tgaSALDDTDVggvnfNNYSRDALMRkLARtde 443 Neurospora crassa
EWC74777 678 C--DNTQENi------LKQQQMAKNINTEEEEQDNEKIDNDdgd----ggGLIAGTGSkialmQKLQRDSIIDpNIPsr- 744 Plasmodium falcipar...
AAL32373 399 lq-trlsqQTEASALAAAASVQp------LATQCFQLSNMFNP---QTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDkN 468 house mouse
BAB09409 414 --------TSVLPTTAIPSFVNeh---vgLPSECLLLKNMFDP---ATETEPNFDLEIRDDVADECSKYGPVNHIYVD-K 478 thale cress
AAD22102 444 ppasvipeRQILKPKTETKPLPvn---vnMASRCVVLHNMFDP---AEEEGENWIKELEDDVREEAEAKYGHVVHISLdP 517 Neurospora crassa
EWC74777 745 ------yaTGANAIMARNSFVPstnninnNVTTNLVLSNMFSSndeNIGSDPDFFNDILEDVKEECSKYGKVVNIWLDtK 818 Plasmodium falcipar...
AAL32373 469 SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDS 518 house mouse
BAB09409 479 NSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMVKQLVRSSSLAF 528 thale cress
AAD22102 518 NSAGDIYLKFDKVQGGENAIKGLNGRYFGGRMITAAPVVDAVYSKSRQPH 567 Neurospora crassa
EWC74777 819 NIDGKIYIKYSNNDESLKSFQFLNGRYFGGSLINAYFISNDVWDMTCLPK 868 Plasmodium falciparum UGT5.1
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