Conserved Protein Domain Family
DNA_S_dndD

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TIGR03185: DNA_S_dndD 
DNA sulfur modification protein DndD
This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. [DNA metabolism, Restriction/modification]
Statistics
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PSSM-Id: 274475
Aligned: 7 rows
Threshold Bit Score: 803.903
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011318995   1 MIFLELVLQNFGPYVGR---QVINLDPRTednP----HP-IILLGGMNGGGKTTLMDSIRLALYGQRAQcSTRGNLSYGD 72  Anabaena variab...
WP_015898227   1 MTFLEIDLENLGPFRGR---HAIKLAVSS---P----RN-IVLIGALNGSGKTTLLNAFQLALYGRDSL-PGRSAKNYQQ 68  Acidobacterium ...
WP_010984362   1 MLLRKITLEEFGAYRGK---QSLDLTPKK---N----KP-IILIGGLNGCGKTTLLDAIQLVLYGNRARcSGRGTKAYET 69  Streptomyces av...
WP_011329736   1 MIIKQLTLENFGIYQGR---HEVNLSTSA---N----KP-IILFGGLNGGGKTTFLDALQLVLYGKHAKcSNRGHQSYGN 69  Pseudoalteromon...
WP_000904413   1 MLIEQLELENIGAYTER---NTFDLSISS---P----KKkVILIGGENGAGKTTFLNSIKLGLFGCFGYgYKTENNDYYK 70  Bacillus cereus...
WP_011400709   1 MILKSLYLQNFGVFQGSfddNHVDLEPRV---KynrkRP-IILFGGLNGAGKTTTLTAIRLALYGKQSLgRSVSVQIYHQ 76  Hahella chejuensis
WP_011332375   4 LSINQISIENLGPFRER---QNFDLSVMP---G----RP-VILLKALNGSGKTTLLTALQIGLYGYKAInIARRTE-YEQ 71  Pseudomonas flu...
WP_011318995  73 FLTQCVNSQANP---TEKTRVELLFEHIEDDKPIKYRIVRTW-EKNPKDGKDALGILGDDd----------tWPVDSLVN 138 Anabaena variab...
WP_015898227  69 YLRHLINNQAAL---HESASITLTLILDDLADDCHIRVERRWwRSQNNEVREQLTVWKGS------------EASDDLTQ 133 Acidobacterium ...
WP_010984362  70 YLRESINRKADP---SRGSAITLEFTVMTGGHEHYYRLVRSW-HISGKTLKEFLNVYVDEtygervkaqrsaEPEGKFNR 145 Streptomyces av...
WP_011329736  70 YLISTKNRYVGN---DDTVEISLTFTHTTDTTTNEFVIVRSW-KTNTKDVKDKVVVYCNQ------------QEDSHLSQ 133 Pseudoalteromon...
WP_000904413  71 RVHGYLNASARKd-eTNPFSITITFSEVENYKRHVYTFKRSW-NILNSAIKEKFTVKKDG---------------HYLND 133 Bacillus cereus...
WP_011400709  77 FLVDAIHKPKGKvlaPNTAGIKLDFNFGRQGEVIDYTVERVW-TVRGKSVFENVEIYQND------------EHLKSLTD 143 Hahella chejuensis
WP_011332375  72 LIAGLQRTDA-----TGPARIEMHLSVEVGHYIQELTLRREW-HPKEKGFGEQFRVFAGH------------MEDLALAE 133 Pseudomonas flu...
WP_011318995 139 ----I----WDD-YIENLLPLGISNLFLFDGEQVKELAEQDTPPQIVIEAIRGLLGLELADRLAVDLEILVNRKRKELAE 209 Anabaena variab...
WP_015898227 134 ----T----WDT-FIASILPARVADLFFLDGEKIEALTAPDQAASIIRKGIFTLLDLDRIEELRANLRVVKRRRLNSIEG 204 Acidobacterium ...
WP_010984362 146 ----LlsegWAD-HVESLLPLEIASLAFFDGEKIESLANPERAASVIESAVHSLLGVSTVQQLRNDLLALQRRQKLSEEE 220 Streptomyces av...
WP_011329736 134 ----Y----WDE-FVNEFIPLSLSDLFFFDGEKIENLAHPDRSADLIKTGIENLLGLDLLSQLQIDLNNVERKRKSENLD 204 Pseudoalteromon...
WP_000904413 134 aekdI----FES-RLRENFPPKLFDLCLFDGEEISKIINENKLSSYLKELSTVIFNLDLFRNLEGDLTNYLQQEIDQEHL 208 Bacillus cereus...
WP_011400709 144 ----H----QKQaFLNELIPIGVADLFFFDGEKIADLAEDNNNSA-LADAINRLLGLDIIDRLKADLGVYLRDRKRDKLP 214 Hahella chejuensis
WP_011332375 134 ----D----WDE-FINGILPVELVHLFFFDGEKIEALANPERLPALLRRATEVFLGLGGIDALAGDLKAVERRANKKVLP 204 Pseudomonas flu...
WP_011318995 210 NK---DLEELEEIEKRLKSQQEDYQVIAEKLAAFKNEIEELETIQREALDKFVSEGGKIAAERNQLEQQQKEKSTAAENI 286 Anabaena variab...
WP_015898227 205 EE---NSDEIRVLEGKVAESLEKRSTLAQERASLTNVLDRANMRVLNAERTFREGGGELFERRERWVRRQTELHAASRHT 281 Acidobacterium ...
WP_010984362 221 QH---LLDNIRAQEAEREAVVSQYDIAHQELAHSRSELGKAQRKLDSLEKAFADEGGDLFTRRVELENDRKQALVRLAQV 297 Streptomyces av...
WP_011329736 205 TT---VVAKVEALEAEITEQTTIVTGFKTDIANLEKRASDTNLSINKARQKVRSAGAHLIEERDIIKFELGAIEEKLKAN 281 Pseudoalteromon...
WP_000904413 209 SS---IESEILTLQRQEKEQSLKIEDLEDTIKTAQQQIEESKESYSLLKKDFETHGGLIKEERETLNRQVLEIEAHRKAN 285 Bacillus cereus...
WP_011400709 215 SA---IQKEMEALENSYKSLYSKYQSQLADIEALRIESTELETTKERLNQIINDLGGAWASNRQEAETKEKMLRAKRNEL 291 Hahella chejuensis
WP_011332375 205 TDcagNHSQTSEYELELKQLEQRIEMLSQRQAHARTNLDEAQRKLESFSIEAQRSGLDAYQQAAQLRVRLALCEQEYGRA 284 Pseudomonas flu...
WP_011318995 287 RQSMCELAAEV-LPLALIPNLLSQVQTQGAKEFR-YQQIQLARDVLLERDKRLLQWLNKLAIGSEQVDKIQSFLVEdVDN 364 Anabaena variab...
WP_015898227 282 SDQLRQIAGRE-LPLLACSALVDQGIDAVRRSDE-AQRLSITIEAIRARDKEYVRILRELQLPASIGKEIAAELAH-TVP 358 Acidobacterium ...
WP_010984362 298 RTELTQLAAGP-LPLLMVAPLLDDVRQQARIEQE-AQQSAQVLEVLEERDRWLLELMPD-ATRAEVLKRLDDDRAE-RAa 373 Streptomyces av...
WP_011329736 282 LAERVKLDAGC-GPLGLIPNLISSTKAQIKKEEQ-AVQANVIQSAITEYEATITQTLVNENVPETALSALSNKMAT-LAK 358 Pseudoalteromon...
WP_000904413 286 SEKVREFIQTL-LPFYLNKNLLLSTKNQLQNEEKlSLANQLTSELTEERALELAKSLPGVSAPNDLAAELRKQIFN-IIK 363 Bacillus cereus...
WP_011400709 292 QVQIRNLIADA-APLALATNQIAALLKQLTDEQQ-SKRQLVLQVELRKQLNKIQSALIK-SLGKEHKKAIETSIEE-SLP 367 Hahella chejuensis
WP_011332375 285 RALLVTALEDPiLPLTWLGPLWESYKAYWQKDHQ-SKHNDLIVEEFAKRDQRILERL---ALDAPHVISIAAELFA-ADL 359 Pseudomonas flu...
WP_011318995 365 lytgY-AQKELPWLLADEEsLSQLDNSIYHLKNAKVLAKQQLAN-LKSIEEELIVLARQVQTAAEPEAYQKLRETVEEAQ 442 Anabaena variab...
WP_015898227 359 ----T-IPSNTPPTSFGIR-SERLERYSAAQRKRLNKDVSALLKeSEKQKNELAEVDQAIEAVPSEEQIAELTWELKDAN 432 Acidobacterium ...
WP_010984362 374 ----K-TQLAVDLRLPHDA-LAQLTVLDELLQRDTQ-RSAQLLHsAAELAEHLDQLDRQLAGVPAQDKVEALQAARGEQI 446 Streptomyces av...
WP_011329736 359 e---R-EELASTECYIASN-IAIFNGLDEKIANDK-LERSNLLKaRVELFEQQALFNKKLESIPDYETVQHLLSELAGLE 432 Pseudoalteromon...
WP_000904413 364 p--nD-TDVEYIHRVSPTQ-RTQFEVAAQQVERESHDTYMQLLQeNRENLLQAQELRKKISTNDSTNEFAQMLETMTQTQ 439 Bacillus cereus...
WP_011400709 368 a--aTsIDTNIIHDISDSE-FNRLNHLITKVVPEQQAKVKALSSeLEEVEEELAHVGLNISRAPDERRISNFVSELGEIE 444 Hahella chejuensis
WP_011332375 360 kglrV-DKSHIPILLSGGD-PTEIEAQFQQAKRRLRDAKEIVATaQRTMEKAQDAVHQ----IPAHEQLSTVFEAMQQHT 433 Pseudomonas flu...
WP_011318995 443 NQVVQSKANY--ETTRRTLS-E--LADSIEQTKKEL----K----EYTDKNIDTKNRGHIITSAA---KVQETLKIFREK 506 Anabaena variab...
WP_015898227 433 AELARVQAAM--ANLDDQIE-R--WNRQIEDARKNL----DsalgTRLKQGISNAEAERVVRHIE---LVDRSLQEYLVK 500 Acidobacterium ...
WP_010984362 447 VEVTRCETTR--DRATAKLE-D--LKRRREHVTTLLerahK----EFVRTKVKAEEVERVIKYSE---KARDTLERFGSA 514 Streptomyces av...
WP_011329736 433 VELKNSFVLIkqKQQLLQQA-Q--ARDEVLNTRY-A----N----LLTQQSKDTFEQKRSIQVADhigKLKNTMKSFADE 500 Pseudoalteromon...
WP_000904413 440 EKIFKLEKEV--EENLSILE-T--RQETLEALKNTI----D----SKQNIVQQSNKTRNTFLIAQ---SIMKLSTEFQML 503 Bacillus cereus...
WP_011400709 445 NSLGQRQVEI--KQRTEAAKaT--LREAMDSLRK-L----R----EKEKEFGNVTNLDQAVTLAD---RTRGLLESFSSK 508 Hahella chejuensis
WP_011332375 434 RGVSAAELQL--HELSRELE-EarNKQAHFELRYQAas-aR----ARAELKENAFHL-KALEAAD---RAKVVLGLFRER 501 Pseudomonas flu...
WP_011318995 507 LTLRKLNKLEEEVKNCFLYLLHKSDLVYRLTIDTKTFALSLFDFDGKRVPKHRLSAGEKQLLAIAFLWGLAKVSGLRLPV 586 Anabaena variab...
WP_015898227 501 MVERHSGDISSKILASFRLIARKPELLSGLKIDPHTFHMSLTGNSGKHIDPGELSAGERQILAFAILDGLAKSSGRQIPT 580 Acidobacterium ...
WP_010984362 515 LLERHISRLEVAVLQSFKVLMRKQGLVRDLRIDTDKFILTLADADGEAIDPARLSAGERQLLAVSLLWGLMRVAGNRLPS 594 Streptomyces av...
WP_011329736 501 LIRENVTGLEEHIAAKFFDLSRKNNLITGVKICPDSFKLTLLDNNKNPMSPSRLSAGERQLLAIAILWGLAEASGKEIPT 580 Pseudoalteromon...
WP_000904413 504 QHQKKLQQVQIEATKMLNKLMRKHQYISSLRIDSSTFEVTLYDNNRDHVAKETLSAGEKEILLLSLIWAMFKCSGRRVPF 583 Bacillus cereus...
WP_011400709 509 SRETRINTLEQEFIKSFAKLARKDDLMITAKIDPETFSVSLIDGTGHIIDKKKLSAGEKQIYAIAMLEALGRTSGRNLPI 588 Hahella chejuensis
WP_011332375 502 LLASKAQWLSEMITTEFKQLLRKRNLISRVLVEAETYAVSIEDVNGYTLPMERLSAGERQILAIAVLSALIRERKGRFPV 581 Pseudomonas flu...
WP_011318995 587 AIDTPLGRLDSSHRQNLVEKYFPSASHQVILLSTDTEIGKKEVETLRSNeaIAREYLLQYNSKTRQTTVIENkYF 661 Anabaena variabilis
WP_015898227 581 LIDSPLGRLDGIHRQRIAQHYLPSASHQTIVFSTDKEVDEQMLRMLNHN--IAASYLLNFNEKAYGTEIKNG-YF 652 Acidobacterium capsu...
WP_010984362 595 VIDTPLGRLDSRHREHLVDRYFPNASDQVLLLSTDEEIDEYLLGRLEKS--VAHTYTLVHDDTEFTTAVVEG-YW 666 Streptomyces avermit...
WP_011329736 581 VIDTPLGRLDGKHRSKLINNYFPKASSQVILLSTDEEITGQYYTQLKPA--ICREYHISYNEHEQTSTFTEG-YF 652 Pseudoalteromonas ha...
WP_000904413 584 IFDTLLGRLDQTHKHNILVDFIPACGEQVLILSTNSEVDEKHYNLLKNF--VSHGYLLEFDTELRKVNVTDQ-YF 655 Bacillus cereus group
WP_011400709 589 IIDTPLGRLDSHHRENLVKNYFPTASHQVLILSTDTEVDEDFYKELSPE--ISHAFEVAYDPEAGSSVYYEG-YF 660 Hahella chejuensis
WP_011332375 582 IVDTPLARLDRSHREALVHNFFAKISHQVMVLSTDEEVEGTVHMALEQH--MSREYSLMFDDESRRSVVsintqq 654 Pseudomonas fluorescens
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