1FFX,1FSZ,1JFF,1Z5V,1FFX,4B45,3ZID


Conserved Protein Domain Family
Tubulin_FtsZ_Cetz-like

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cd00286: Tubulin_FtsZ_Cetz-like 
Click on image for an interactive view with Cn3D
Tubulin protein family of FtsZ and CetZ-like
This family includes tubulin alpha-, beta-, gamma-, delta-, epsilon, and zeta-tubulins as well as FtsZ and CetZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts. A recent study found that CetZ proteins, formerly annotated FtsZ type 2, are not required for cell division, whereas FtsZ proteins play an important role. Instead, CetZ proteins are shown to be involved in controlling archaeal cell shape dynamics. The results from inactivation studies of CetZ proteins in Haloferax volcanii suggest that CetZ1 is essential for normal swimming motility and rod-cell development.
Statistics
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PSSM-Id: 276954
Aligned: 11 rows
Threshold Bit Score: 225.75
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
nucleotide
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:nucleotide binding site [chemical binding site]
Evidence:
  • Comment:In alpha-tubulin, N-site (non-exchangeable) buried at monomer-monomer interface within dimer
  • Structure:1FFX_C: Bos taurus alpha tubulin with bound GTP (defined using 4.0 A contacts)
    View structure with Cn3D
  • Comment:In beta-tubulin, E-site (exchangeable) exposed on surface of dimer
  • Structure:1JFF_B: Bos taurus beta tubulin with bound GDP (defined using 4.0 A contacts)
    View structure with Cn3D
  • Structure:1FSZ_A: Methanocaldococcus jannaschii FtsZ with bound GDP (defined using 4.0 A contacts)
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            ###  #                                                                   
1FFX_C      3 ECISIHVGQAGVQIGNACWELYclehgiqpdgqmpsdktiggg------ddsfntffsetgagkhvpraVFVDLEPTVid 76  cow
YP_137684   2 KLAMIGFGQAGGKIVDKFLEYDketgsg------------------------------------ivrsaVAVNTAKADll 45  Haloarcula marismo...
1FSZ_A     39 KITVVGCGGAGNNTITRLKMEGieg-----------------------------------------aktVAINTDAQQli 77  Methanocaldococcus...
1JFF_B      3 EIVHIQAGQCGNQIGAKFWEVIsdehgidptgsyhgdsdlql--------erinvyyneaagnkyvpraILVDLEPGTmd 74  cow
Q9UJT0      3 QSVVVQVGQCGNQIGCCFWDLAlrehaavnqkgiydeaissffrnvdtrvvgdggsiskgkicslkaraVLIDMEEGVvn 82  human
Q9BUK6      7 EVLTLQLGHFAGFVGAHWWNQQdaalgratdskeppgelcpd--------vlyrtgrtlhgqetytprlILMDLKGSLss 78  human
1Z5V_A      4 EIITLQLGQCGNQIGFEFWKQLcaehgispeaiveefategt--------drkdvffyqaddehyipraVLLDLEPRVih 75  human
AAF09584    2 SIVTVQLGQCGNQIGFEVFDALlsdshssqglcsmreneayq-------asckerffseeengvpiaraVLVDMEPKVin 74  human
1FFX_A      3 ECISIHVGQAGVQIGNACWELYclehgiqpdgqmpsdktiggg------ddsfntffsetgagkhvpraVFVDLEPTVid 76  pig
4B45_A      2 KTVLIGVGQAGGKLASALQSFDrqtgfg------------------------------------avldaVAVNTAKADlq 45  Haloferax volcanii
3ZID_A      3 NVLMLGVGQCGNRILDAVNRQAfggsrlakyys--------------------------kqrfpsrvetIAINTAINDlk 56  Methanosaeta therm...
Feature 1                                                                                     
1FFX_C     77 evrtgty------------------------------------------------------------------------- 83  cow
YP_137684  46 gleh---------------------------------------------------------------------------- 49  Haloarcula marismo...
1FSZ_A     78 rt------------------------------------------------------------------------------ 79  Methanocaldococcus...
1JFF_B     75 svrsgpf------------------------------------------------------------------------- 81  cow
Q9UJT0     83 eilqgpl------------------------------------------------------------------------- 89  human
Q9BUK6     79 lkeegglyrdkqldaaiawqgkltthkeelypknpylqdflsaegvlssdgvwrvksipngkgssplptattpkplipte 158 human
1Z5V_A     76 silnspy------------------------------------------------------------------------- 82  human
AAF09584   75 qtlskaaq------------------------------------------------------------------------ 82  human
1FFX_A     77 evrtgty------------------------------------------------------------------------- 83  pig
4B45_A     46 sl------------------------------------------------------------------------------ 47  Haloferax volcanii
3ZID_A     57 elkf---------------------------------------------------------------------------- 60  Methanosaeta therm...
Feature 1                                                                               #  # #
1FFX_C     84 ----------rqlfhpeqLITGke-------dAANNYARGHYtigk-eiiDLVLDRIrkladqctglqGFSVFHSFGGgT 145 cow
YP_137684  50 -------------ipeenRVLIgqarv-kghgVGADNELGAEiae--ediDEVQGAIdnipv--hevdAFLIVAGLGGgT 111 Haloarcula marismo...
1FSZ_A     80 --------------kadkKILIgkklt-rglgAGGNPKIGEEaak--esaEEIKAAIqd-------sdMVFITCGLGGgT 135 Methanocaldococcus...
1JFF_B     82 ----------gqifrpdnFVFGqs-------gAGNNWAKGHYtega-elvDSVLDVVrkesescdclqGFQLTHSLGGgT 143 cow
Q9UJT0     90 ----------rdvfdtkqLITDis-------gSGNNWAVGHKvfgs-lyqDQILEKFrksaehcdclqCFFIIHSMGGgT 151 human
Q9BUK6    159 asirvwsdflrvhlhprsICMIqkynhdgeagRLEAFGQGESvlkepkyqEELEDRLhfyveecdylqGFQILCDLHD-G 237 human
1Z5V_A     83 ----------aklynpenIYLSehg-----ggAGNNWASGFSqge--kihEDIFDIIdreadgsdsleGFVLCHSIAGgT 145 human
AAF09584   83 ---------sgqwkygqhACFCqk------qgSGNNWAYGYSvhgp-rheESIMNIIrkevekcdsfsGFFIIMSMAGgT 146 human
1FFX_A     84 ----------rqlfhpeqLITGke-------dAANNYARGHYtigk-eiiDLVLDRIrkladqctglqGFSVFHSFGGgT 145 pig
4B45_A     48 ---------------pveTVLIgqdrv-nghgVGGDNELGAAvme--sdqTEVMSALdgrvt--aeaeSIFVVAGLGGgS 107 Haloferax volcanii
3ZID_A     61 -------------taakdRLHVpnl-----hgVGANRSKGKQgfw--enqEMILEEIekrg----dfdLIFVMTSVSGgT 116 Methanosaeta therm...
Feature 1     #                        # #                                     #              
1FFX_C    146 GSGFTSLLMERLSVdygkkskLEFSIYPAPqvst----avvEPYNSILTTHTTLeh-sDCAFMVDNEAIYdicrrn---- 216 cow
YP_137684 112 GSGGSPVVAKHLKRiyt-epvYGLGVLPGSdeg------giYTLNAARSFQTFVre-vDNLMVFDNDAWRqtge------ 177 Haloarcula marismo...
1FSZ_A    136 GTGSAPVVAEISKKiga--ltVAVVTLPFVmeg------kvRMKNAMEGLERLKqh-tDTLVVIPNEKLFeivpn----- 201 Methanocaldococcus...
1JFF_B    144 GSGMGTLLISKIREeypdrimNTFSVVPSPkvsd----tvvEPYNATLSVHQLVen-tDETYCIDNEALYdicfrt---- 214 cow
Q9UJT0    152 GSGLGTFLLKVLEDefpevyrFVTSIYPSGedd-----vitSPYNSILAMKELNeh-aDCVLPIDNQSLFdiiskidlmv 225 human
Q9BUK6    238 FSGVGAKAAELLQDeysgrgiITWGLLPGPyhrgeaqrniyRLLNTAFGLVHLTah-sSLVCPLSLGGSLglrpeppvs- 315 human
1Z5V_A    146 GSGLGSYLLERLNDrypkklvQTYSVFPNQdems---dvvvQPYNSLLTLKRLTqn-aDCLVVLDNTALNriatdr---- 217 human
AAF09584  147 GSGLGAFVTQNLEDqysnslkMNQIIWPYGtge-----vivQNYNSILTLSHLYrs-sDALLLHENDAIHkicakl---- 216 human
1FFX_A    146 GSGFTSLLMERLSVdygkkskLEFSIYPAPqvst----avvEPYNSILTTHTTLeh-sDCAFMVDNEAIYdicrrn---- 216 pig
4B45_A    108 GSGGAPVLAKALAGvyd-vpvYVLGILPGAdeg------alYQVNAGRSLKTVAre-aDAVLLVDNDAFRsage------ 173 Haloferax volcanii
3ZID_A    117 GSSFSPLMIHELKKryknatiVPIAVLPFReeg------tiYLQNAAFCLREMIeveaDGMILVDNQYLKrfsg------ 184 Methanosaeta therm...
Feature 1                                  #  ##                                              
1FFX_C    217 ----------------------ldierpTYTNLNRLIGQIVSSITASLrfdgalnvdlte--------------fqtnlv 260 cow
YP_137684 178 ------------------------svegGYDHINEEIVRRFGVLFGAGeieagdnvaesvv------------dsseiin 221 Haloarcula marismo...
1FSZ_A    202 -----------------------mplklAFKVADEVLINAVKGLVELItkdglinvdf-----------------advka 241 Methanocaldococcus...
1JFF_B    215 ----------------------lklttpTYGDLNHLVSATMSGVTTCLrfpgqlnadlrk--------------lavnmv 258 cow
Q9UJT0    226 nsgklgttvkpkslvtsssgalkkqhkkPFDAMNNIVANLLLNLTSSArfegslnmdlne--------------ismnlv 291 human
Q9BUK6    316 -------------------fpylhydatLPFHCSAILATALDTVTVPYrlcsspvsmvhladmlsfcgkkvvtagaiipf 376 human
1Z5V_A    218 ----------------------lhiqnpSFSQINQLVSTIMSASTTTLrypgymnndlig--------------liasli 261 human
AAF09584  217 ----------------------mnikqiSFSDINQVLAHQLGSVFQPTysaessfhyrrnpl----------gdlmehlv 264 human
1FFX_A    217 ----------------------ldierpTYTNLNRLIGQIVSSITASLrfdgalnvdlte--------------fqtnlv 260 pig
4B45_A    174 ------------------------smseGYDAINEAIARRVGLLLAAGeategvgesvvd--------------tsevin 215 Haloferax volcanii
3ZID_A    185 ------------------------diasAYDRINTMVAQRLLFLIEALdsemlsvtdlg----------------dfktv 224 Methanosaeta therm...
Feature 1                                                                                     
1FFX_C    261 pypraHFPLATYAPvisaeka---------------------yheqlsVAEITNACFEpanqmvk--------------- 304 cow
YP_137684 222 tldggGVSTVGYASedvevssggggllsrfkgddssddsmdtanttnrITSLVRKAALgrltl----------------- 284 Haloarcula marismo...
1FSZ_A    242 vmnngGLAMIGIGEsds----------------------------ekrAKEAVSMALNsplld----------------- 276 Methanocaldococcus...
1JFF_B    259 pfprlHFFMPGFAPltsrgsq---------------------qyraltVPELTQQMFDaknmmaa--------------- 302 cow
Q9UJT0    292 pfpqlHYLVSSLTPlytltdv---------------------nipprrLDQMFSDAFSkdhqllr--------------- 335 human
Q9BUK6    377 plapgQSLPDSLMQfggatpw---------------------tplsacGEPSGTRCFAqsvvlrgidrachtsql-tpgt 434 human
1Z5V_A    262 ptprlHFLMTGYTPlttdqsv--------------------asvrkttVLDVMRRLLQpknvmvst-------------- 307 human
AAF09584  265 phpefKMLSVRNIPhmsenslay-----------------ttftwaglLKHLRQMLISnakmeegidrhvwpplsglppl 327 human
1FFX_A    261 pypraHFPLATYAPvisaeka---------------------yheqlsVAEITNACFEpanqmvk--------------- 304 pig
4B45_A    216 tlrsgGIAALGYASaeaspna---------------------edninaVMSTTRRAVLtgtsl----------------- 257 Haloferax volcanii
3ZID_A    225 mngglRMGTLGYYQadkk---------------------------spsIRAAIKNSLRevgllyp--------------- 262 Methanosaeta therm...
Feature 1                                                                                     
1FFX_C    305 ------cdprhgKYMACCLLYRGdv---vPKDVNAAIATIKTKrtiqfvdwcpTGFKVGINYepptvvpggdlakvqRAV 375 cow
YP_137684 285 -------pceieGAERALLVMAGppehlnRKGIERGRKWLEEQtg-------sMEVRGGDYPtna----------pkVAA 340 Haloarcula marismo...
1FSZ_A    277 --------vdidGATGALIHVMGped-ltLEEAREVVATVSSRld------pnATIIWGATIdenl--------entVRV 333 Methanocaldococcus...
1JFF_B    303 ------cdprhgRYLTVAAVFRGrm---sMKEVDEQMLNVQNKnssyfvewipNNVKTAVCDippr--------glkMSA 365 cow
Q9UJT0    336 ------adpkhsLYLACALMVRGnv---qISDLRRNIERLKPSlqfv--swnqEGWKTSLCSvppv--------ghsHSL 396 human
Q9BUK6    435 pppsalhacttgEEILAQYLQQQqpgvmsSSHLLLTPCRVAPPyphlfsscspPGMVLDGSPkgaa-------vesiPVF 507 human
1Z5V_A    308 ----grdrqtnhCYIAILNIIQGev---dPTQVHKSLQRIRERklanfipwgpASIQVALSRkspyl-----psahrVSG 375 human
AAF09584  328 skmslnkdlhfnTSIANLVILRGkd--vqSADVEGFKDPALYTswlkp-vnafNVWKTQRAFsk-----------yeKSA 393 human
1FFX_A    305 ------cdprhgKYMACCLLYRGdv---vPKDVNAAIATIKTKrtiqfvdwcpTGFKVGINYepptvvpggdlakvqRAV 375 pig
4B45_A    258 --------pdasDADAALVVIAGepdtipRKGVERARRWVEDEtg-------sMQVRGGDFPles----------grLAS 312 Haloferax volcanii
3ZID_A    263 ------anvdagEAGRAMIVIQGsreylnVDEITKEIESLTETi---------GHVFKGIVIkk-----------gePRV 316 Methanosaeta therm...
Feature 1           
1FFX_C    376 CMLSNT 381 cow
YP_137684 341 SILLAG 346 Haloarcula marismortui ATCC 43049
1FSZ_A    334 LLVITG 339 Methanocaldococcus jannaschii
1JFF_B    366 TFIGNS 371 cow
Q9UJT0    397 LALANN 402 human
Q9BUK6    508 GALCSS 513 human
1Z5V_A    376 LMMANH 381 human
AAF09584  394 VLVSNS 399 human
1FFX_A    376 CMLSNT 381 pig
4B45_A    313 LVLLGG 318 Haloferax volcanii
3ZID_A    317 LSVLSL 322 Methanosaeta thermophila

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