4OL8


Conserved Protein Domain Family
RVT_1

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pfam00078: RVT_1 (this model, PSSM-Id:278506 is obsolete and has been replaced by 395031)
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Reverse transcriptase (RNA-dependent DNA polymerase)
A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses.
Statistics
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PSSM-Id: 278506
Aligned: 69 rows
Threshold Bit Score: 119.714
Created: 12-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4OL8_E  106 VPKKD-------GTFRLc----vDYRTLNKATIS------------DPFPLPRIDNL-----------------LSRIGN 145  baker's yeast
P16425  498 LLKGPdkdkcepSSYRGicllpvFGKVLEAIMVNrvre----vlpeGCRWQFGFRQGrcvedawr---hvkssvgaSAAQ 570  fruit fly
Q93139  469 LRKSGkdsytepKSHRPigllpvLGKLYEKMLVArlkyh---llprMSTRQFGFMPQrstedsly-tlmqhvkeKLKEKR 544  domestic silkworm
O01419  502 IPKEGrpr-dqpSGYRPivvlseAGKLLERVVAGrlvrhlenvgpnLADSQYGFRRGrstldavq-rvrdlsdqACSRGG 579  domestic silkworm
Q26816  545 ILKAGkka-edlDSYRPvtltscLCKVMERIIAArlrdt---vesqLTPQQSAFRPGcstleql---lhvraalCRPTHQ 617  Trypanosoma brucei
P21328  502 IHKTGktp-tdvDSYRPtsllpsLGKIMERLILNrlltck-dvtkaIPKFQFGFRLQhgtpeqlhr-vvnfaleaMENKE 578  fruit fly
Q04135  496 IPKPGkdk-tqpSSYRPislltcLSKLFEKMLLLrisphl-rinntLPTHQFGFREKhgtieqvn-ritseirtAFEHRE 572  fruit fly
O96546  526 IHKPGkrr-tepSSYRPisllrgLGKIYERIVLSrlrtfa-eannlVPDAQFGFRAKhscvqqvh-rlveytssQFIMNR 602  gypsy moth
Q93137  515 KPKNDp------TSYRPisllmsLGKLYERLLYKrlrdfv-sskgiLIDEQFGFRTNhscvqqvhrltehilvgLNRPKP 587  domestic silkworm
Q07995  509 IPKHGkpa-selSSYRPisllssISKILERVLLNrindhl-ednniIPNQQCGFRTGrstshqli-kviksakeNLNNKK 585  Chironomus thummi
4OL8_E  146 A-QIFTTLDLHSGYHQIPXEPKDRYKTAFVTP-------------------------SGKYEYTVXPFGLVNAPSTFARY 199  baker's yeast
P16425  571 Y-VLGTFVDFKGAFDNVEWSAALSRLADLGCRemglwqsffsg---rravirsssgtVEVPVTRGCPQGSISGPFIWDIL 646  fruit fly
Q93139  545 I-ITIVSLDIEGAFDSAWWPALEVRLAEEKCPeylrrvissyls-drrvsvryagaeYERATSKGCVQGSIGGPILWNLL 622  domestic silkworm
O01419  580 V-LLAVSIDISNAFNTVPWSTILESLRFHRVPtglrnliedyla-gravvfperrgwGHKAVSCGVPQGSVLGPLLWDVG 657  domestic silkworm
Q26816  618 S-RTGAVFVDYKAFDTVDHDKIAREMHRMKVSphivkwcvsflsnrtgrvrfkeklsRSRTFERGVPQGIVLGPIMFIIV 696  Trypanosoma brucei
P21328  579 Y-AVGAFLDIQQAFDRVWHPGLLYKAKRLFPPqlylvvksflee-rtfhvsvdgyksSIKPIAAGVPQGSVLGPTLYSVF 656  fruit fly
Q04135  573 Y-CTAIFLDVAQAFDRVWLDGLLFKIIK-LLPqnthkllksylynrvfaircdtstsRDCAIEAGVPQGSVLGPILYTLY 650  fruit fly
O96546  603 Y-TGVLFLDVAKAFDKVWHEGLIYKLYLLKIPhylihiihdylshrsfryrvegtlsTSHPIKAGVPQGSVLSPFLFTLY 681  gypsy moth
Q93137  588 LyTGALFFDVAKAFDKVWHNGLIFKLFNMGVPdslvliirdflsnrsfryrvegtrsSPRPLTAGVPQGSVLSPLLFSLF 667  domestic silkworm
Q07995  586 S-TGMIFLDVEKAFDRVWHPGLLYKMLKLRFPlpliktvrsflsersfavfikgqfsEIKVIKFGVPQGAVLSPTLYNIF 664  Chironomus thummi
4OL8_E  200 XADTFRDLR---------FVNVYLDDILIFSES-PEE------HWKHLDTVLERLKNENLIVKKKKCKFA---------- 253  baker's yeast
P16425  647 MDVLLQRLQpy------cQLSAYADDLLLLVEG-NSRavleekGAQLMSIVETWGAEVGDCLSTSKTVIMllkgalrrap 719  fruit fly
Q93139  623 LDPLIHQLQar-----geYIQAFADDVVLVFDG-DSAlqierqANTSLEHVQAWGVRNKLKFAPHKTCAMtitrrlkydt 696  domestic silkworm
O01419  658 FDWVLRGANlr-----gvQVICYADDTLVTARGdDYRsas-ilAAAAVATVVARIRKLGLEVALHKSEAVcfhparkgpp 731  domestic silkworm
Q26816  697 MNSLSQRLAevp----llQHGFFADDLTLFSRH-TERnvinhtLQCGLNVVLQWSKEYFMSVNVAKTKGTlcgcierhpl 771  Trypanosoma brucei
P21328  657 ASDMPTHTPvtevdeedvLIATYADDTAVLTKS-KSIlaatsgLQEYLDAFQQWAENWNVRINAEKCANVtfanrtgscp 735  fruit fly
Q04135  651 TADFPIDYNl--------TTSTFADDTAILSRS-KCPikatalLSRHLTSVERWLADWRISINVQKCKQVtftlnkqtcp 721  fruit fly
O96546  682 TSDMPKFNRv--------HKALYADDTALFCAG-RSPttvartLQTAVTALANWFRNWRLEINPEKSQAVmftrrtarsy 752  gypsy moth
Q93137  668 VNDIPRSPPt--------HLALFADDTTVYYSS-RNKsliakkLQSAALALGQWFRKWRIDINPAKSTAVlfqrgsstri 738  domestic silkworm
Q07995  665 TYDVVRETTn--------NIGLFADDTALYHSAeNSAdiv-thLQHTGRKVQQYMNKWKINLNKQKTQALfitnrhsrql 735  Chironomus thummi
4OL8_E  254 ----------------------SEETEFLGYSI 264  baker's yeast
P16425  720 t-----------vrfagrnlpyVRSCRYLGITV 741  fruit fly
Q93139  697 p----------rlnmggteiatYKELRILGLTI 719  domestic silkworm
O01419  732 pg--------asitiggtaiavRSQLKYLGLVL 756  domestic silkworm
Q26816  772 t-----------lqldgerigaDRTPKLLGVTF 793  Trypanosoma brucei
P21328  736 g-----------vslngrlirhHQAYKYLGITL 757  fruit fly
Q04135  722 p-----------lvlnnicipqADEVTYLGVHL 743  fruit fly
O96546  753 sids-----ipplkifnkpvtwTRQAKYLGVTL 780  gypsy moth
Q93137  739 ssrirrrnltppitlfrqpipwARKVKYLGVTL 771  domestic silkworm
Q07995  736 pg--------nnikflnenikwETEAKYLGMVI 760  Chironomus thummi
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