2LEM,2A01


Conserved Protein Domain Family
Apolipoprotein

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pfam01442: Apolipoprotein (this model, PSSM-Id:279749 is obsolete and has been replaced by 396157)
Click on image for an interactive view with Cn3D
Apolipoprotein A1/A4/E domain
These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I, Apolipoprotein A-IV and Apolipoprotein E.
Statistics
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PSSM-Id: 279749
View PSSM: pfam01442
Aligned: 113 rows
Threshold Bit Score: 41.1217
Threshold Setting Gi: 81633460
Created: 9-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2LEM_A         49 WDTLGSTVSQLQERLGPLT---RDFWDNLEKETD-----------WVRQeM------NKDLEEVKQKVQPYLDEFQKKWK 108  house mouse
Q89HV2       1261 ERSVLAASSSFGQAMTGKT---DEIVTYVQQQAD-----------RLSNmI------DAKRGALVDAIGSKTSQLTLDID 1320 Bradyrhizobiu...
Q92K98       1505 AAKVSETARQASDMLSTSTrliEGKVDKLSDISS-----------STLSqIggivgrFEDHSKVLGQASDLLAAAQSNLV 1573 Sinorhizobium...
WP_014286483  588 sSAAEGASSQVSAVLSNGV---TELTTSVTRAST-----------ELSEaL------AATTSTVTDQINSANDTLTETMN 647  Pseudovibrio ...
WP_047109721 5442 LSSVNERIADLENRLT-------SDVSRFNNMIS-----------EAVDkY------EDELKNIESYRLEENESIMRNLE 5497 Brachyspira h...
WP_047109721 3451 IAEIENRLSETNSKLNDDI---AVNLDNLNNMIN-----------DAMAkY------NEEIKNIENYRAIESDKLLEDSK 3510 Brachyspira h...
WP_047109721 4159 yNKLDEKISDIESRLS-------DTDSKLNNEISsnlnnlyntlnEAKAkY------DEEIKNIENYRTDENSKLLEDYQ 4225 Brachyspira h...
WP_047109721  597 kdteyniKENLEKRL-EIL---EKSSVEINGLVS-----------RANEkL------DTGIKDTEEKIDDIKKEISSYSD 655  Brachyspira h...
WP_012318927 1410 salVETRERQLAATLDART---QRLQTLFEEAQA-----------GLRDlV------DGRGQEVADAIAARTEGLRTTLD 1469 Methylobacter...
WP_012028717 1269 ersvlaagnsfgsamtgKT---DEIVTYVQQQSE-----------RLSQmL------DGKRGTLVETLNSKTNQLTIEID 1328 Bradyrhizobiu...
2LEM_A        109 EDVELYRQKASPQGAElqesaRQKLQELQGRL------------------SPVAEEFR-----DRMRTHV---------- 155  house mouse
Q89HV2       1321 RVTSDALKSIETRGHAfsqtmMGNGSEVARTI------------------NAASEMAT-----GAVGKSLkdleqasraa 1377 Bradyrhizobiu...
Q92K98       1574 STLEERQDA----LRTlsvglVQRSEEIERTMralegfvdgafqraeersGQVAGNLR-----SGIQSSF---------- 1634 Sinorhizobium...
WP_014286483  648 LGVVSINQSVETAGSEltttlLTASNEVTEKI------------------TTANDNLT-----ETLKGSV---------- 694  Pseudovibrio ...
WP_047109721 5498 DIGRNIISNYDNYSKMldsvyENN----KNAL------------------DEYSNSLRieiekARVDTNK---------- 5545 Brachyspira h...
WP_047109721 3511 KLIEDIKNGYEHYSNLineayNNSVNSL----------------------TDYSNSVK-----AEIEKSR---------- 3553 Brachyspira h...
WP_047109721 4226 KLIDEIKSGYDHYSNLinetyNNSLNSL----------------------TDYSNLVK-----EEIEKAR---------- 4268 Brachyspira h...
WP_047109721  656 AYIESLKSHLKNVLDDyeqtkMK---AITDSI------------------DSVINQVD-----ESEKRH----------- 698  Brachyspira h...
WP_012318927 1470 AAPAQMADLLDTRLSDlqglfERAQGEIDRLV------------------DSRGRQIA-----GTIEHRT---------- 1516 Methylobacter...
WP_012028717 1329 RVTTDALKQIEMRGQAfaqtvNGNGSEVARTI------------------TSAGELAT-----TAITKSLkdleqasraa 1385 Bradyrhizobiu...
2LEM_A        156 --DS------------LRTQLAPHSE--QMRESLAQRLAELKSN--P----TLNeyhsSAKSHLKSLGEKARPALEDLRH 213  house mouse
Q89HV2       1378 idQS------------RQVSIAAVTEmqETSKILRTDTVALFERlrE----GNIllqeVLTGAHDNLNSLERALVTRVAD 1441 Bradyrhizobiu...
Q92K98       1635 -------------------------------SDVGRLLSNTEQRatE----AAEalrdTLVKASDEAAASVEGVFSQAEE 1679 Sinorhizobium...
WP_014286483  695 --DT------------ITRTVDGVSG--ELSQSLDSGVELLSQTvtNstaaIAE----TMESGVTNLNESVYGASAQLTE 754  Pseudovibrio ...
WP_047109721 5546 --GY------------IDEYLSEYSS--KVEADIKERLEELEKNkyNldvmIND----SFNNLNQSINNAVSKMIEDSDS 5605 Brachyspira h...
WP_047109721 3554 --EEseskhlaneknyIDEYLKNYSD--KLDSKVSEKIDSFNTAkdSldrlIRK----SFHKLESNVQDAISKFEKESNS 3625 Brachyspira h...
WP_047109721 4269 --EEseskhlnneknyIDNYLKEYSD--KLNNEISEKINMLTEAkeQldnmVKE----SFDNLENSFNDAVIRFEEETSN 4340 Brachyspira h...
WP_047109721  699 --DE------------LISNIENSID--DFKNKMDLAINENVKFneEskkeVVD----MLHNELRQATDAFDTLLNEKRD 758  Brachyspira h...
WP_012318927 1517 --QA------------LQATIEGVNP--AIAGLLEERETRLAETlkErtgeLQT----LFDRVQNRLGALVEGTGRDVSE 1576 Methylobacter...
WP_012028717 1386 ieQS------------RQVSVAAVTEmqETSKILRTDTVALFERlrE----GNIllqeVLTGAHDNLNSLERALVARVAD 1449 Bradyrhizobiu...
2LEM_A        214 SLM 216  house mouse
Q89HV2       1442 FVS 1444 Bradyrhizobium japonicum
Q92K98       1680 RSR 1682 Sinorhizobium meliloti
WP_014286483  755 TLD 757  Pseudovibrio sp. FO-BEG1
WP_047109721 5606 KLR 5608 Brachyspira hyodysenteriae
WP_047109721 3626 KVL 3628 Brachyspira hyodysenteriae
WP_047109721 4341 KVL 4343 Brachyspira hyodysenteriae
WP_047109721  759 SMN 761  Brachyspira hyodysenteriae
WP_012318927 1577 RVD 1579 Methylobacterium radiotolerans
WP_012028717 1450 FVT 1452 Bradyrhizobium sp. ORS 278
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