4BJ4,4C2G,3BKH,4FET


Conserved Protein Domain Family
PG_binding_1

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pfam01471: PG_binding_1 (this model, PSSM-Id:279773 is obsolete and has been replaced by 334552)
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Putative peptidoglycan binding domain
This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.
Statistics
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PSSM-Id: 279773
View PSSM: pfam01471
Aligned: 207 rows
Threshold Bit Score: 35.5598
Threshold Setting Gi: 81504526
Created: 23-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4BJ4_B 184 QLPDVRWFQQQLARHg-yL--VPQTGELEKDTRDVIGAFQMKYRPArFDGEPDLETAALL 240 Pseudomonas aeruginosa PAO1
O34320  77 KKNIVKIIQGALYCKg-yGp-GGLTGTFGQGTKEAIAEMQLHMGLSkTDGVVTPKVFKAL 134 Bacillus subtilis subsp. subtilis str. 168
Q8ENJ3 406 TSEEIANMQVMLTGLg-yDt-GRTDGYFDEQTAEAVKDFQADNDLE-ATGEVDSETGGLI 462 Oceanobacillus iheyensis
Q985J2 207 PDPRIVKIQAGLKAFg-nDd-MQLDGVVGARTKAAIKEFQSLFGLP-QTGEPDEIVYVKM 263 Mesorhizobium loti
Q2YMU0 275 sSQDIVRVQAGLKAFg-nDt-VPVNGQPGKATQEAVREFQKLFGLH-VTGEIDSALISKM 331 Brucella abortus 2308
Q89Y71 207 IASTVVLMQQALNKLg-aNppLAEDGISGPKTKAAVSQFQQQNGLR-DTGLLDGATVAAV 264 Bradyrhizobium japonicum
Q987F6 209 MAKDVVWLQHSLNALg-aNpqLVEDGKSGPLTRTALSRFQQLNGLN-DTGLADPLTIAAI 266 Mesorhizobium loti
Q8YQJ7  92 AANIVQILQANLNAVlktNppLPRDQFYGPKTEAAIKEFQKKHQLE-ATGIANLALRQKL 150 Nostoc sp. PCC 7120
Q97HY0 227 ETNPVKIIQQQLNTVl-ySsnLTIDGIQGNATTQQIRVFQQVCGLK-IDGIWGQQCVNAI 284 Clostridium acetobutylicum
P34020 198 GDDNIKAIQQDLNILl--KrgLEVDGIEGPETEAAIKDFQSIMGLT-VDGIWGTNTSGAA 254 Clostridium acetobutylicum ATCC 824
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