1WJA,3F9K,4FW2


Conserved Protein Domain Family
Integrase_Zn
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pfam02022: Integrase_Zn (this model, PSSM-Id:280240 is obsolete and has been replaced by 426567)
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Integrase Zinc binding domain
Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. This domain is the amino-terminal domain zinc binding domain. The central domain is the catalytic domain pfam00665. The carboxyl terminal domain is a DNA binding domain pfam00552.
Links
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Statistics
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PSSM-Id: 280240
Aligned: 19 rows
Threshold Bit Score: 46.9572
Created: 21-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1WJA_A      8 AQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQL 45   Human immunodeficiency virus 1
Q04095   1285 AKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNS 1322 Rous sarcoma virus (strain Schmidt-Ruppin A)
P18096   1178 AQEEHEKYHSIIKELTHKFGIPLLVARQIVNSCAQCQQ 1215 Human immunodeficiency virus type 2 (ISOLATE BEN)
P04585   1155 AQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQL 1192 HIV-1 M:B_HXB2R
P63133    592 AQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQV 629  human
P03363   1168 PQGLHGLTHCNQRALVS-FGATPREAKSLVQTCHTCQT 1204 Human T-lymphotropic virus 2
Q0R5R2   1148 T-TLHQLTHCNPYALRN-HGATASEAHAIVQACHTCKV 1183 HTLV-3 strain 2026ND
AAM81191  588 AKEYHSKWHVNTHTLSFKFNIPRKQAEDIIRSCEKCVV 625  rabbit
EGV93609  314 ASEFHRKHHVNSKGLKKDFSITWQQVKEIVRNCPTCsf 351  Chinese hamster
3F9K_A      9 AQEEHEKYHSNVKELSHKFGIPNLVARQIVNSCAQCQQ 46   Human immunodeficiency virus type 2 (ISOLATE ROD)
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