1O1Z


Conserved Protein Domain Family
GDPD

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pfam03009: GDPD (this model, PSSM-Id:281062 is obsolete and has been replaced by 397241)
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Glycerophosphoryl diester phosphodiesterase family
E. coli has two sequence related isozymes of glycerophosphoryl diester phosphodiesterase (GDPD) - periplasmic and cytosolic. This family also includes agrocinopine synthase, the similarity to GDPD has been noted. This family appears to have weak but not significant matches to mammalian phospholipase C pfam00388, which suggests that this family may adopt a TIM barrel fold.
Statistics
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PSSM-Id: 281062
Aligned: 30 rows
Threshold Bit Score: 133.673
Created: 14-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1O1Z_A        18 HRGYSAKYL---ENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHD-EDLKRLFGLDV--KIRDATVSELKELT----- 86  Thermotoga mari...
Q89384         5 HRGCSALFP---ENTMMSFRHV--IP-KAIEFDVRKTKDNIPVVFHD-STLDRMTHSCG--KVKNFTLNELSNLS----- 70  Paramecium burs...
Q9RWX3         7 HRGSPREHT---ENTLASFQAALDAGLDGIELDVRRLADGTLAVHHD----AALPDGRQ---LPHLTRAELPERVp---- 72  Deinococcus rad...
Q9YFI4        15 HRANSGRIA--------IFYSM--VGIKAVEV-DVSLKSGKPMALHGrPSVRRATPIGR---LWGWIDYKLFYRDp---- 76  Aeropyrum pernix
O86738        16 HRGDPYRHR---ENTLDSLRSALERGADAVETDVRLTRDGVPVLLHD-ETLKRLWQHDR--PLRSLSAEEVRGLT----- 84  Streptomyces co...
Q3BZN0       274 HRGLFDNHAgipENSLASIDHAYEQGYRNLELDVEVSSDGVPVLMHD-FSIGRMAGDPQnrLVSQVPFAELREMP----- 347 Xanthomonas cam...
Q9RSP0        37 HQGGEALWP---SNTLTAYRGAVALGVDLLEMDLHATRDGALVLSHD-ATLDRLTDTQG--RIADLTLEQVLRADagytl 110 Deinococcus rad...
WP_003977406  20 HRGGAADGL---ENTLRQFRRAVGAGYRYIETDVHATRDGKLVAFHD-GTLDRVTDGAG--RIADLPWENVRHARv---- 89  Streptomyces
CFC53813      17 HRGASAARP---EHTLAAYDLALKEGADGVECDVRLTRDGHLVCVHD-RRLDRTSTGAG--LVSTMTLAQLRELEy---- 86  Mycobacterium t...
CFH52194       3 HRGFTSFRLp--MNSMGAFQEAAKLGFRYIETDVRATRDGVAVILHD-RRLAPGVGLSG--AVDRLDWRDVRKAQl---- 73  Mycobacterium t...
1O1Z_A        87 ---DG-------KIT-------TLKEVFEN---VSDDKIINIEIKEREAADAVLEI---SKKRKNLIFSSFD-------L 136 Thermotoga mari...
Q89384        71 ---IRns----tEKIp------TLNQVLDE---FKDEYTYDIEIKSSDTASAVVET---IQKSNIPYENTLVt------- 124 Paramecium burs...
Q9RWX3        73 ----------------------TLPEVLA----WAVDCEAYVNLELKWESPLPDD----RVVRMLDSIRVHGl-----sR 117 Deinococcus rad...
Q9YFI4        77 ----------------------LYKPMP-----LANWLERLWSMGFTKVVIDVKSGg--IDPTLLASEVERGw-----pG 122 Aeropyrum pernix
O86738        85 ---AGgv--------------pTLAEALAA---TDGARLMLDLPGGPGERAVRRVVd--VVRECGARDRVYY-------- 134 Streptomyces co...
Q3BZN0       348 ---LVirnpsdgNYVk------TDQTIAGV---EQMLEHVLKKPEPMSVALDCKENtgeAVAMLLMRRPDLRka---aaI 412 Xanthomonas cam...
Q9RSP0       111 tpaGGsgfpfrgQGVqv----aQLKDVLR----EFPNTPLIIELKQASPSIAAPFCa-eLRRAGATGRVIAAsfs--daA 179 Deinococcus rad...
WP_003977406  90 --aGEepvplfeE---------LLETFPAVr--WNVDVKAEPALEPLLELIGRHNa---WDRICVGSFSEarv---vraQ 150 Streptomyces
CFC53813      87 --gAWhds-wrpDGShgdtsllTLDALVSLvldWHRPVKIFVETKHPVRYGS--LVe--NKLLALLYRFGIAapasadrS 159 Mycobacterium t...
CFH52194      74 --gAGqsiptleDLLt------ALPDMR-----VNIDIKAASAIEPTVNVIERCNa---HNRVLIGSFSERRrr---raL 134 Mycobacterium t...
1O1Z_A       137 DLLDEKFKGTKYGYLIDEEN-YGSIENFVERVEKERp-----YSLHVPYQAFELEYAVEVLR-----SFRKKGIVIFVWT 205 Thermotoga mari...
Q89384       125 -----SFKWDEIQHVRTIDDkIPTGLISVIRPAKTIr-----FAHKLGCKVVVLNHHLVNREiv--kFATDRNINVYAYT 192 Paramecium burs...
Q9RWX3       118 RVIVSSFNPLLLRAARELAPeVERGLLYHRPYRLGPlnlpeaVGRWVDCAALHPQHQLIDAPli--sMARRRGWRVNAWT 195 Deinococcus rad...
Q9YFI4       123 QVIYTSENHRYLRRLREEASaVVYTTYSILPVDVADp------ALKAGAEGVSIRFDLAIEDnv-irALRQSGLKVVVWT 195 Aeropyrum pernix
O86738       135 TAG-----AATMLAVRAADPaAEIAMTWTTAAPPRAg-----LLAAVRPRWLNYRFGLVDRAla--eRVHRDGFLLSVWT 202 Streptomyces co...
Q3BZN0       413 KVYAKYYTGGFDQFLSNLYKhYQINPLHSQDAPRRAal--drLLAKINVVPVLSQGMLNDERlrgffRSNEQGAAGLADT 490 Xanthomonas cam...
Q9RSP0       180 LNEFRRLCPEVMTSMTEREL-RPLVLLSKVGLSALAp----tPGQVAQVPVRSGGIEIVTPAfv--rALHARGVAVQVWT 252 Deinococcus rad...
WP_003977406 151 RLAG--PRLATSCGTRGVLG-LRLRSWGVPVAPRr-------SAVAAQVPETQSGVPVVDHRfl--rAAHARGLQVHVWT 218 Streptomyces
CFC53813     160 RAVVMSFSAAAVWRIRRAAPlLPTVLLGKTPRYLTSsaa-taVGATAVGPSL----PALKEYpqlvdRSAAQGRAVYCWN 234 Mycobacterium t...
CFH52194     135 RLL--TKRVASSAGTGALLAwLTARPLGS-RAYAWRmm---rDIDCVQLPSRLGGVPVITPArv--rGFHAAGRQVHAWT 206 Mycobacterium t...
1O1Z_A       206 LNDP--EIyRKIRREIDGVITDEVEL 229 Thermotoga maritima
Q89384       193 VNDYs-EIvKLFSYGVKCVITDNPNI 217 Paramecium bursaria Chlorella virus 1
Q9RWX3       196 VNEVa-DVqRLAALGVDGLIGDVPAH 220 Deinococcus radiodurans
Q9YFI4       196 VNTEd-QAkTVEKLGVDAIVSDRPDK 220 Aeropyrum pernix
O86738       203 PDTRr-TMrRLRAAGVDSITTNRIDV 227 Streptomyces coelicolor
Q3BZN0       491 AMQWldSWtKMRPVIVEAVATDDSDA 516 Xanthomonas campestris pv. vesicatoria str. 85-10
Q9RSP0       253 IDDEa-EMrRLVQMGVDGVITNRPDL 277 Deinococcus radiodurans
WP_003977406 219 VNDAd-RMhRLLDLGVDGIMTDHIDT 243 Streptomyces
CFC53813     235 VDEYe-DIdFCREVGVAWIGTHHPGr 259 Mycobacterium tuberculosis
CFH52194     207 VDEPd-VMhTLLDMDVDGIITDRADL 231 Mycobacterium tuberculosis
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