1XHX


Conserved Protein Domain Family
DNA_pol_B_2

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pfam03175: DNA_pol_B_2 (this model, PSSM-Id:281206 is obsolete and has been replaced by 367375)
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DNA polymerase type B, organellar and viral
Like pfam00136, members of this family are also DNA polymerase type B proteins. Those included here are found in plant and fungal mitochondria, and in viruses.
Statistics
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PSSM-Id: 281206
Aligned: 36 rows
Threshold Bit Score: 236.091
Created: 18-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1XHX_A     53 KVQADLYFHNL-KFAGAFIINWLERn------------gFKWSADGLPNT----------------------------YN 91   Bacillus phage phi29
O78938     73 YKNYKVYLHNFaKFDGYFLVKYLSKlgf--------idnIIINKGRIITLkfiynkysi-----------tfkdsyllLP 133  Agrocybe aegerita
P33538    407 YDGYKVYTHNFsYFDGIFIIDILSRlge---------vkPFMRNGKILKLtfnftlpnskrk-----ytlyfmdslliLP 472  Neurospora interm...
P22374    595 NHGKKFYVHNLaHFDSVFILDTLSKlgk---------idIIMRDDKIMKLkitfkipgknte-----ysisfldsllmLP 660  Ascobolus immersus
Q9TEH5    311 NLPGYIYVHNLtKFDAYFILKIIYDnfv---------vkPLYKDRTILQLdmtlktfetntkkc-knkrmvlkdsyllLP 380  Morchella conica
P33537    371 YDKHTVYCHNFsKFDINFIIKILVQefv--------vekIISKDLDILSIkisykfepkkkggkaerhtitiadscrlLP 442  Neurospora crassa
Q9XNK1    744 NDNRFYYAHNLsDFDGMFVLKSLINtskshd---lkikvLSKNDGTIISLeikkilinkki------ikitlldslhlLP 814  oyster mushroom
P10582    301 GSSMVVYFHNLsQFDGIMILSFLTKsykn------chiePIMRNDCIYSIklykvskngdkr-----lvltfmdsyllLK 369  Zea mays
O21376    480 ANNYTFYCHNLsGFDSVYIMSALIKytrvkgsesditfkIIRREAKVLKMtvrymdesgke------sqmvmldsltvLN 553  Pichia kluyveri
BAD66818  150 PEIQTVYFHNFsRFDGILILRHLVLhnde------yeirPLMRNGRLYEVvvyfkkrml----------frfrdslnlLP 213  sugar beet
1XHX_A     92 TIISRMGQWYMI----------DI----CLGYKGKR--KIHTVIYDSLKKLPFPVKKIAKDFKLTVLKgdidyhkerpvG 155  Bacillus phage phi29
O78938    134 SSLRKLCKSFNT----------QTqk-dIFPYLLDD-----INYIGEVPDYKYFCNLEMEEYNNYKSNf---------kV 188  Agrocybe aegerita
P33538    473 DSLDKLSNFFNN----------KVkk-lFFPHSFLD--DNTIPINYVGKCPDYKYFPKAYTEDFTIEQyqeyankfknnN 539  Neurospora interm...
P22374    661 NSLDNLSKAFNI----------ENkk-sVFPLKFTN--GAVTPFNYIGAVPGYEYFYNTPNKKFTKDDykkyc-kdfnnN 726  Ascobolus immersus
Q9TEH5    381 ESLKRLGTNFNT----------NIqk-gYFPYDFVN--ENRLEY-----IGEIPNYQYFKNQLTQTEYdeikn-spdssK 441  Morchella conica
P33537    443 GSLDKLAKDHNI-----------ItkkgKFPYKFVN--KDNLEYVGLLPDYEYYIDPKKGEMITLFEWaam-----ytnK 504  Neurospora crassa
Q9XNK1    815 FSLRDLGKVFSLkknsfynetkNIigkgNFPHDFIQklGIDKALEYKGLVPDIKYFDNLSEEDYITEIvnrik-neengV 893  oyster mushroom
P10582    370 VKLADLADSFCP----------ELggkgSFDHQNVT-------------VDKLP-------------------------- 400  Zea mays
O21376    554 ASLRKTSPLFEL----------EHqk-gYLPYDWVS-----TNTNYMGPIPQSFNDDVKAYLLELFPNgm--------mN 609  Pichia kluyveri
BAD66818  214 GSLDYLSSNLCP----------ELgnkgSFDHSSMNlen-------------------------------------vkkK 246  sugar beet
1XHX_A    156 YKITPEEYAYIKNDIQIIAEaLLIQFKQGLD---------RMTAGSDSLKGFKDIiT---T-----------------KK 206  Bacillus phage phi29
O78938    189 WNFREEAIKYCNLDCISLYE-ILYKFNTLVFnkfelninkYPTLPSLSFALFKTK-Y---------------------LK 245  Agrocybe aegerita
P33538    540 WDLKKELIKYCEIDTIALYQ-VLVSFQRKIYekfmidctkYPTIPSLAFAIFRKK-Y---------------------LV 596  Neurospora interm...
P22374    727 WDFNKELKNYCEIDCLALHD-ILTLFAKMIHnefsvditrYVSLSSITFAIFRTN-F---------------------LP 783  Ascobolus immersus
Q9TEH5    442 RDLKKETIKYLEQDIKTLCE-VLIKFSDEIWeere-nitkCSSLSGLAYLIFKTN-Y---------------------IK 497  Morchella conica
P33537    505 WSMRKETIIYLEKDIKALYQ-LMMEMSNNTYstfrinitrVKTASALAFLVYRTI-FlpnEveeenetnspnnilslfDK 582  Neurospora crassa
Q9XNK1    894 WDCEKELLKYLNGDIDTLYS-VMYTFGEFIFdkfninitrIRTYSGLAFLIYTSR-Y---Y-----------------DS 951  oyster mushroom
P10582    401 -SIREDSLTYLKQDILITAA-VMQRAKAIIWeeygidilkVLTISALALKIFRRV-Y---Y-----------------KD 457  Zea mays
O21376    610 TKMATKT--YTDTDVRLLTM-IMDKFKNIMYstarvdltkCMTISKLALSMYSNM-C---------------------HD 664  Pichia kluyveri
BAD66818  247 RDVVIE---YMKQDIRLLGG-VMQKAQDIYWnlfevdlvdWITVASQALGIFRMN-F---F-----------------ND 301  sugar beet
1XHX_A    207 FKK-------VFPTLSLGLDKEVRYAYRGGFTw-lNDRFKEKEIGEGMVFDVNSLYPAQMYSrLLPYGEP---IVFEGKY 275  Bacillus phage phi29
O78938    246 ENE--------VHMLSGSIATNIRKSYTGGSVdmyIPLIEK--DSKIFIYDINSLYPFSMKSfKFPIGNP---TFFKGDI 312  Agrocybe aegerita
P33538    597 EDM--------IPNIKSKLHNIIKLSYFGGICelyKPF-----GVNIKSYDVNSLYPFAMKYfKMPSGIP---KYVKGTL 660  Neurospora interm...
P22374    784 ENK-------IPNITCTKLHYILKQAYTGGYCdvfKPE-----GKNIHSYDINSLYPSAMAKfDMPTGTP---LHILG-- 846  Ascobolus immersus
Q9TEH5    498 DSK---------LSMVKGVAHEIWEAYYGGRCevsYPC------IKTKSYDCNSIYPYCMLK-DMPVEN----LFEVTII 557  Morchella conica
P33537    583 KEEkkltpkyFLPKLKGRLERAVRAAYFGGRNeifIPI-----INNIFSFDFNSLYPTAMMM-PMPVGIP---------- 646  Neurospora crassa
Q9XNK1    952 IKK-------PIFLTTGKIDNYIRNAYYGGIV----DSWTFYSEKPLFKYDFKSHYPNQMRNnPMPGGLP---IFSTETN 1017 oyster mushroom
P10582    458 DDDn------WIYIPDDNEAQFIREGYYGGHTdvyKPY-----GENLYYYDVNSLYPSSMLD-DMPIGKT---RWVSDLG 522  Zea mays
O21376    665 ETKk------MPLMSSTMDDTFMRKALFGGYNnviNPM-----ADEAYYYDVNSFYPAVAVKyRYPTTKGfdmSYPEGLD 733  Pichia kluyveri
BAD66818  302 MDF-------HIHIPNRNEDTFIRRGYYGGHAdayIPK-----GTNLYYYDVNSLYPFIMKEyPMPSGKP---VWASNLG 366  sugar beet
1XHX_A    276 VWDEDYPLh-----IQHIRCEFEL---KEG--YIPTIQIKrsrfykGNEYLKSSGGEIADlWLSNVdlELMKEHYDL-YN 344  Bacillus phage phi29
O78938    313 TRINKDa-------FGFFYCKIITpeyLEH----PILQTHlk--tsDGIRTLAPLGSWEDmLFSE---EMYNAMKYG-YK 375  Agrocybe aegerita
P33538    661 QNIVRFTDsicevpFGFYNVKVKTplnLDK----PFLPTRln--tpAGTRTAFPLGQWEG-WYFSE--EILNAMKHG-YE 730  Neurospora interm...
P22374    847 -DPYKFTKd----pFGFVFAEVTAp---DL--KVPIIQTRvq--tsGGVRTVAPIGTFKG-WYLLD--ELINAKKYG-YT 910  Ascobolus immersus
Q9TEH5    558 ILIi----------FRYVYAKIK----TIGntKYPFIPFR------SETGLLFPLGSWED-WYFSE--ELKYAVKSGlYQ 614  Morchella conica
P33537    647 VHTFCKNLne---iFGFVRAKIITpa-----iNIPVLPCRvk--vnGVQKLIFPIGEWTG-WYFSE--ELKLAVEYG-YK 712  Neurospora crassa
Q9XNK1   1018 LDLi----------FGFVRAEVTApseKEL--RVAILPIKg-----PNGELITFRGTVEGtWFSE---ELKNAETYG-YK 1076 oyster mushroom
P10582    523 SKKSKIVLnd---mFGFIRAFIICpkhIKK----PLLPYKk-----DDGTIIFPTGRFLG-VYFSE--ELKYAVSLG-YK 586  Zea mays
O21376    734 YKDFNYPEt-----TGVLHCEVETpknLVT----GVLPVKd-----INKGVMYPLGHFLGiWTTV---ELDYALSLG-YK 795  Pichia kluyveri
BAD66818  367 GMDLDSl-------YGFIEAYVECpesIVR----PFLPYHk----vKDPTLLFPTGEWIGvYYTE---ELKYAKSLG-YT 427  sugar beet
1XHX_A    345 -VEYISGLKFKATTGLFKDFIDKWTYIKTTSEG----AIKQLAKLMLNSLYGKFASNPDvTGKVPYLKEN--GAlg--fR 415  Bacillus phage phi29
O78938    376 -FEILWGYTFES-KNIFSEIISDLYKMRLEYQKs--dPMNYIAKILMNSLYGRFGMDDN-FTFSDIMDKD--DYfnfekL 448  Agrocybe aegerita
P33538    731 -FEFIEGYLFEE-SSMFDEYIDLLYNIKKNSPKe--sPWYYISKLLMNSLYGRFGLNPE-GEEIFITSEE--EGd---aI 800  Neurospora interm...
P22374    911 -FKISEAYLFER-LNIFKEYIHRLYTIKSSYTPd--dPMYFIAKLLMNSLYGRFGMDPI-TIKYSVLTPE--ESe---eK 980  Ascobolus immersus
Q9TEH5    615 -VEVIHSYKYEAGVDIFKDYVEKYYGLNPVLEQv--lWEEPTAKLLLNGLYGRFGMNPH-TTQATIVASA--DLp---tF 685  Morchella conica
P33537    713 -IEVLESYVFEKRDDPFKEYIEHFASIKDNTKGs----KKQMAKLLLNTLYGRTGMNDS-AAEIKMLTTN--ELdn--iQ 782  Neurospora crassa
Q9XNK1   1077 -IKVKDCLQFEKVYNLFDDFVNEFYNLKTEAEMnkddISRLIYKLILNSLSGRWGLRDL-NTEMKVIESK--DLn---fL 1149 oyster mushroom
P10582    587 -VYPICGYIFDRKESPFKRFVYDIYSKRLDAKAkgekALDFIYKITMNSLYGRFGISPE-STTTQIVSTE--ESrk-laL 661  Zea mays
O21376    796 -ITVYKGMVFNSMESPYKKYMDLFYSRKSNAKGi----YRTLYKSTLNNLLGRFSLAPM-NYKDAMMDNTtfKMlsllhN 869  Pichia kluyveri
BAD66818  428 vIPIK-GYLFQKRESPFKDYVGSLFERRLQAKEdgneAMSLLYKLVMNSLYGRFGIHPK-STKTDIGGIK--EYq---yR 500  sugar beet
1XHX_A    416 LGEEETKDPVYTPMGVFITAWA-RYTTITAAQACY-----------------DRIIYCDTDSIHLTGTEIPDVIKDI 474  Bacillus phage phi29
O78938    449 DRNNSILDVTELNNNNFLVTTK-NPKVELDTILDNgse------------khDINIAIASAITAYSRIQMSKFKNNp 512  Agrocybe aegerita
P33538    801 IATKEYVTITPLSSGNVLISAK-LPEEAFGDMNIS--------------------VPISSAIAAYSRIHMSHFLTKY 856  Neurospora intermedia
P22374    981 LKNSSCIEATTLPSGNVLFKEN-KPLGEFSNLNTS--------------------VPISAAIAAYSRMIMSEYLIKY 1036 Ascobolus immersus
Q9TEH5    686 ILDNDVIDYFTIFVGYEWVTYT-PKKFASDNIVRKensplt-----nfhaelEQSVQISIRITAYARICMAETIKHV 756  Morchella conica
P33537    783 LTNNVIHEFEVDDDKHYVRYDK-KPCPVLCAQSEKnyellsyldgekddgfiINSTSIAAATASWSRILMYKHIINS 858  Neurospora crassa
Q9XNK1   1150 NKTENVDTLFESNRLSLIKSHGpLDPEVVDLFSKEnli-----------enkKINPFIEDKDKPWGKNKSAVQLSAA 1215 oyster mushroom
P10582    662 YNDGFVQSYELSSDKCLVTCKN-VRSLDLLKLSSDrp--------------tYAAVQISAAVTGYARIRMHPFISRD 723  Zea mays
O21376    870 ITNMLEMKDFDVKMCHVEKEIK-YTPDNMPEYVNKvrns---------efytNALKSMNNFVQNTNTLDSSVIMTTF 936  Pichia kluyveri
BAD66818  501 MRQESWLDGDYLGNDKYVLSYH-TNMDNTIDRWDPp---------------kNSAIQLAAAITACARIYMYKYTSRE 561  sugar beet
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