Conserved Protein Domain Family
PspA_IM30

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pfam04012: PspA_IM30 (this model, PSSM-Id:281941 is obsolete and has been replaced by 461130)
PspA/IM30 family
This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.
Statistics
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PSSM-Id: 281941
Aligned: 11 rows
Threshold Bit Score: 120.176
Created: 20-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P9WHP5   3 NPFVKAWKYLMALFSSKIDEHADPK--VQIQQAIEEAQRTHQALTQQAAQVIGNQRQLEMRLNRQLADIEKLQVNVRQAL 80  Mycobacterium tubercu...
Q55707   2 GLFDRLGRVVRANLNDLVSKAEDPE--KVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLNQDTQEAKKWEDRAKLAL 79  Synechocystis sp. PCC...
P74717   2 ELFNRVGRVLKSQLTHWQQQQEAPE--DLLERLLGEMELELIELRRALAQTIATFKSTERQRDAQQLIAQRWYEKAQAAL 79  Synechocystis sp. PCC...
Q9KDL6   1 MVFDRMKNLVLASIHEGLDKLEDPE--MMLNQYIRNVQSEMGRAEKAIEEQKKLHVSLERDLEEAKRLMKRREEQAKAAL 78  Bacillus halodurans
O32201   1 MVLKRIRDMFVASVHEGLDKMENPK--VMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYEEAAEVAGKRKNQAQLAF 78  Bacillus subtilis sub...
Q9KRG4   2 GIFSRFADIVNSNISALLDKAEDPE--KMIRLIIQEMEDTLVEVRTNSAKAMADKKELARKVESIEQQLEDWQNKATLAL 79  Vibrio cholerae
Q9RUB7   2 SIFDRLSRLLRANVNDMISKAEDPA--KIIDQALRDMRSAYADARNEVAGAMAQAAKLEREAGTNSKLAAEYEKKAEEAL 79  Deinococcus radiodura...
O67361   3 GLLKRLLRVVRAEAHSVVEKLEDPI--KITEEGLRELRKQLKEAMEALAQVKASQIRFEREARNEKERAKALVKKAESLL 80  Aquifex aeolicus
Q9A5T5   2 SIWSKLSALFRGAAHDGAQTVVDANalRILDQEIRDADSAQGKARDELAKLVARRRALETEVAQLTDQSRKYESSARAAM 81  Caulobacter vibrioides
Q9HXR1   2 TVWSKLLSALRGGANEVGEAIVDSQalRILDQEIRDADVELRKSREALASIMARHRLAQERVEKGAAQVAEYEQYAIKAL 81  Pseudomonas aeruginosa
P0AF78   2 GILKSLFTLGKSFISQAEESIEETQgvRMLEQHIRDAKAELDKAGKSRVDLLARVKLSHDKLKDLRERKASLEARALEAL 81  Escherichia coli K-12
P9WHP5  81 TLAdqataagdaakateYNNAAEAFAAQLVTAEQSVEDLKTLHDQALSAAAQAKKAVERNAMVLQQKIAERTKLLSQLEQ 160 Mycobacterium tubercu...
Q55707  80 TNG--------------EENLAREALARKKSLTDTAAAYQTQLAQQRTMSENLRRNLAALEAKISEAKTKKNMLQARAKA 145 Synechocystis sp. PCC...
P74717  80 DRG--------------NEQLAREALGQRQSYQSHTEALGKSLGEQRALVEQVRGQLQKLERKYLELKSQKNLYLARLKS 145 Synechocystis sp. PCC...
Q9KDL6  79 SAG--------------EEELAKKALYSKKNAAEQVARYEALMQKSHDHVLELRLQLEDLEKKYEQLRDKKRELLLRSQS 144 Bacillus halodurans
O32201  79 DAG--------------EEELAKKALTEMKYLEGKAAEHKASYEQANSQLADLKEQLAALETKLQDVKDKKQALIARANA 144 Bacillus subtilis sub...
Q9KRG4  80 TKQ--------------REDLARAALIEKQKLQHVLKGLHTEQMLVEETIEKLTGEIGKLETKITETRAKQQALAIRSQA 145 Vibrio cholerae
Q9RUB7  80 RGG--------------SEDLAREALRRAQNHKDLAKGFDEQRTVQQSTVDQLKTQLRALEAKIDEMESKKTLLAARQKT 145 Deinococcus radiodura...
O67361  81 LQAqegki-----speeAEKLAAELIQKAELHEKNARRLEEEAKRQREMAVKLQAKIDELKVQIAKYEAELKTLKARLAT 155 Aquifex aeolicus
Q9A5T5  82 NKG--------------DQALALEVAQRIADLEKDAGQKSTQMTELRAAEEKLRTVIAQTDTKVEALRREIEIVKVNESV 147 Caulobacter vibrioides
Q9HXR1  82 EAG--------------NEELAREVAEKIATLENQLEGERAQVAEFAASVAQLRKSVSQAEGNIRQLKQQVDTVKATESV 147 Pseudomonas aeruginosa
P0AF78  82 SKNv-------------NPSLINEVAEEIARLENLITAEEQVLSNLEVSRDGVEKAVTATAQRIAQFEQQMEVVKATEAM 148 Escherichia coli K-12
P9WHP5 161 AKMQEQVSASLRSMSelaAPGNTPSLDEVRDKIERRYANAIGSAELAe---------sSVQG----RMLEVEQAGIQMAG 227 Mycobacterium tubercu...
Q55707 146 AKANAELQQTLGGLG---TSSATSAFERMENKVLDMEATSQAAGELAgfgienqfaqlEASSgvedELAALKASMAGGAL 222 Synechocystis sp. PCC...
P74717 146 AIAAQKIEEIAGNLD---NASASSLFERIETKILELEAERELLNPPP-----------SPL------DKKFEQWEEQQAV 205 Synechocystis sp. PCC...
Q9KDL6 145 IKAFEQMKKARATFS---TEGSERQFQRMEEKIEDMELRESAREGRRg----------FSVD----YDEQVEQEFLNMKK 207 Bacillus halodurans
O32201 145 AKAKEHMNTTFDKID---SESAYREFLRIENRIEEMEIRANYSKSAEa---------gTELT----RKEFADDVEAEIEK 208 Bacillus subtilis sub...
Q9KRG4 146 ASHRRDVQRHLHAGR---TEEAMAKFEQFSRKVDELEAEADLYAQSG-----------QARS----LEQEFAELQAQDEI 207 Vibrio cholerae
Q9RUB7 146 AQAGETLDRVSGFSK---AGGAMDAFNEMEQKVAGMEDRNKAMGELR-----------NDQd----FDAQLKDLGRDKDV 207 Deinococcus radiodura...
O67361 156 ARAVKKVNKQIAKVD---PSDTIAMLERMKEKVEEEETLAQAYEELAk----------QEVA----LDVESEAEKKLKEV 218 Aquifex aeolicus
Q9A5T5 148 QKAQAAVISRSGSASg-vVGSAADSLKRIKERQAVREEQFRLHSESE-----------DRKTga-dLDAKLAAAGILPGA 214 Caulobacter vibrioides
Q9HXR1 148 QKAQMAVAQRYGNSKs-kLQTAVDSLERIKQRQAERAATMDAAAELA-----------SAAApddaLDAKLRAAGIKASG 215 Pseudomonas aeruginosa
P0AF78 149 QRAQQAVTTSTVGASs-sVSTAAESLKRLQTRQAERQARLDAAAQLE-----------KVADgr-dLDEKLAEAGIGGSN 215 Escherichia coli K-12
P9WHP5 228 hSrlEQIRASMRGEA 242 Mycobacterium tuberculosis H37Rv
Q55707 223 -PgtSAATPQLEAAP 236 Synechocystis sp. PCC 6803 substr. Kazusa
P74717 206 ----EATLAAMKARR 216 Synechocystis sp. PCC 6803
Q9KDL6 208 ----SLVDTKNASEQ 218 Bacillus halodurans
O32201 209 ----MRTLSLQKSDQ 219 Bacillus subtilis subsp. subtilis str. 168
Q9KRG4 208 ----EKELNKLKA-Q 217 Vibrio cholerae
Q9RUB7 208 ----DDALAALKA-K 217 Deinococcus radiodurans R1
O67361 219 eS--KQKLEELKKRL 231 Aquifex aeolicus
Q9A5T5 215 -SgaEDVLARLMAPK 228 Caulobacter vibrioides
Q9HXR1 216 -NsvDGVLARLKE-K 228 Pseudomonas aeruginosa
P0AF78 216 kSsaQDVLARLQRQQ 230 Escherichia coli K-12
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