Conserved Protein Domain Family
PKD_channel

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pfam08016: PKD_channel (this model, PSSM-Id:285288 is obsolete and has been replaced by 462341)
Polycystin cation channel
This family contains the cation channel region of PKD1 and PKD2 proteins.
Statistics
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PSSM-Id: 285288
Aligned: 12 rows
Threshold Bit Score: 441.016
Created: 21-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9Z0T6       1621 SVDLATVMKLGDIYTWLHGVFLPLL-----HNDPNptfl----pdssSKILGLPLVRQVRARPSnktcLLAKKFVQSSVa 1691 house mouse
O08852       3701 SQAFLAITRSDEFWPWMSHVFLPYV-----HGNQS------------SPELGPPRLRQVRLQEA----FCPDPSSSEHM- 3758 house mouse
Q95V80       2211 NKDYHLMNDFRSFLKWADSTLLPGL-----LSENRwgae-----kqsTLIGGGLRLRQVRVKPSs--cETHPLFVDLINd 2278 purple sea ur...
Q9VK95        402 VSGNYLKDDSDSI-----------------QANMSfhhlegrvflyeNLLLGPPRLRQIRVRKEs--cYVNDAFIRYFNt 462  fruit fly
Q9U1S7        119 APAFGSCTSMDNIWDWLSQVLIPGIyw-teTSNSTdnenm---iyyeNRLLGEPRIRMLKVTNDs--cTVMKSFQREIKe 192  Caenorhabditi...
O35245        265 KTNFKTLSSMEDFWKFTEGSFLDGLywkaqTSNHTqadnrs-fifyeNLLLGVPRLRQLRVRNGs--cSIPQDLRDEIKe 341  house mouse
A2A259        145 gvSFQTISSMSDFWDFAQGPLLDSLywtkwYNNQSlgrgshsfiyyeNLLLGAPRLRQLRVRNDs--cVVHEDFREDILn 222  house mouse
Q8T8Z2        169 TFGLSQVYFIYQVHSYMKITLVEAF-----YAQKTngyegw-wameqWQKIGVVRLRQMRPVD----------------- 225  fruit fly
Q9VVZ8        165 AFGLLSVGDVPDIYFFVVSSLVLAF-----TDGKNtsggapwihaegTRLLGVVRLRQLRTES----------------- 222  fruit fly
Q9W4X5        169 yTGLQEVYFLNQLFDFIESTLVLAF-----NSNSTesgspgwahaeqSVLLGVMRLRQLRVSN----------------- 226  fruit fly
Q9NTG1       1748 SMDLATVTKLEDIYRWLNSVLLPLL-----HNDLNptfl----pessSKILGLPLMRQVRAKSSekmcLPAEKFVQNSIr 1818 human
XP_015297841 2698 srTFLAITRSEELWPWMAHVLLPYV-----HGNQS------------SPELGPPRLRQVRLQEA----LCPDPPGPRVHt 2756 crab-eating m...
Q9Z0T6       1692 geihCHPQYGIDPEDtqhYSSVWskagKQSTDKASHGFTYKP-----------PGKRw-------------VYHSYGVLN 1747 house mouse
O08852       3759 ----CSAAGSLSTSD---YGIGW----QSVVQNGSETWAYSA-----------PDLL--------------GAWYWGYCA 3802 house mouse
Q95V80       2279 ----CRALFTPESEDrelYNASWs---QPIVNMSALLNSSQT-----------VEEWslsnyspwhfypdkAVGMWGHAT 2340 purple sea ur...
Q9VK95        463 ----CYAAYSSGAEDr-----------KPMHKGSP----FRT-----------MHDLd-------------STPIWTVLA 499  fruit fly
Q9U1S7        193 ----CFANYEEKLEDk-----------TMVGDGSVDAFIYAT-----------AKELe-------------NLKTVGTIA 233  Caenorhabditi...
O35245        342 ----CYDVYSVSSEDr-----------APFGPRNGTAWMYTS-----------EKELn-------------GSSHWGIIA 382  house mouse
A2A259        223 ----CYDVYSPDKEDq-----------LPFGPQNGTAWTYHS-----------QNELg-------------GSSHWGRLT 263  house mouse
Q8T8Z2        226 ----CHIGLGKPEWDkktYAPEWrlpyHRMHYTEKFWRIYDPfvpaefepsflNGLLl-------------NYDHYGYLL 288  fruit fly
Q9VVZ8        223 ----NRLGLSLPVFTerdFSESWtlpyERVPYTDKYWPIYTPwlpsv--svarDNLLm-------------GINHVGHMF 283  fruit fly
Q9W4X5        227 ----PQVGLGPPKFSdtyYMPDWqlpyRKLHYSDKYWRIYEPwipikmgfeflDALLm-------------NFDHVGSLN 289  fruit fly
Q9NTG1       1819 reihCHPKYGIDPEDtknYSGFWnevdKQAIDESTNGFTYKP-----------QGTQw-------------LYYSYGLLH 1874 human
XP_015297841 2757 ----CSAAGGFSTSD---YDVGWe-----SPHNGSGTWAYSA-----------PDLL--------------GAWSWGSCA 2799 crab-eating m...
Q9Z0T6       1748 TYG-SGGYVFyFFPgQQMFNSTVRLKELEGKNWLDELTWAVIVELTTLNPDTSLMCSISVVFEVSPLGVVNSSLSVYSFS 1826 house mouse
O08852       3803 VYD-SGGYIQ-ELG-LSLEESRARLGFLQLHNWLDSRSRAVFVELTRYSPAVGLHAAVTLRLEFPVAGHALAAFSVRPFA 3879 house mouse
Q95V80       2341 SLP-SSGYIW-VLG-SMYEEAKDSLAEMVDARWLDARTRALFVEWTSYNANTNLFCVVTFLMETPASGGLLKLPEVQAVR 2417 purple sea ur...
Q9VK95        500 FYR-TGGYTV-NLD-YDKDRNVKIINDLKDIHWLDRGSRLCLVEFNLFNENTDIFQSIKLIAEIPPTGGVIPQAHLQTVK 576  fruit fly
Q9U1S7        234 SYG-GGGFVQ-RLPvAGSTEAQSAIATLKANRWIDRGSRAIIVDFALYNANINLFCVVKLLFELPASGGVITTPKLMTYD 311  Caenorhabditi...
O35245        383 SYS-GAGYYL-DLS-RTREETAAQLAGLRRNFWLDRGTRAAFIDFSVYNANINLFCVVRLLAEFPATGGVVPSWQFQPVK 459  house mouse
A2A259        264 SYS-GGGYYL-DLP-GSRQASAEALQGLQEGLWLDRGTRVVFIDFSVYNANINLFCILRLVVEFPATGGTIPSWQIRTVK 340  house mouse
Q8T8Z2        289 NYPeVAGYVV-LMM-STKINCLKQIEYLRDYSWLDKNTSALFIDLTMYNADANLFTLITLRVENSPFGIQLPRVHVDSVS 366  fruit fly
Q9VVZ8        284 NYPeSKGYKV-LLS-DTRHKSLKIIDYLMKKNWLDANTTALFMDFSLYNADANTFTVCTLWVEKFPYQYPDGHTRIESHT 361  fruit fly
Q9W4X5        290 SYPeLAGYVS-LLA-RSAANSMKVIDYLSENHWLTLNTSAVFIDFTLYNVDVNLFSICTLRVEKTPFGGIVPDVQVDSAK 367  fruit fly
Q9NTG1       1875 TYG-SGGYALyFFPeQQRFNSTLRLKELQESNWLDEKTWAVVLELTTFNPDINLFCSISVIFEVSQLGVVNTSISLHSFS 1953 human
XP_015297841 2800 VYD-SGGYVQ-ELG-LSLEESRDRLRFLQLHNWLDNRSRAVFVELTRYSPAVGLHAAVTLRLEFPAAGRALAALSVRPFA 2876 crab-eating m...
Q9Z0T6       1827 LADFNRKTSSEIYL-YAAILIFFCAYVVDEGYIIRQER-ASYIR-SVYnlLNFSLKCMFALLIVLFFWKYFLATKMVQLY 1903 house mouse
O08852       3880 LRRLSTGLSLPLLT-SVCLLLFALYFSMAEVQTWRKDGcACTARpDTW--ARCLLVILTAATGLVRLAQLGIADRQWTHF 3956 house mouse
Q95V80       2418 LHRYAANYKLFVILcEILFVVALFFVMYREYVRYKPIGiRKYLS-DKWnlLEIAIIVNCIVSAGLYIYRYVITKQLFKQM 2496 purple sea ur...
Q9VK95        577 MYSFFTDRSMLMTViYIFWYIMVIYYTIYEITEIRKSGiKIYFC-SMLniLDCAILLGCYLALVYNIWHSFKVMSLTARA 655  fruit fly
Q9U1S7        312 LLTYQTSGGTRMMIfEGIFCGFILYFIFEELFAIGRHR-LHYLT-QFWnlVDVVLLGFSVATIILSVNRTKTGVNRVNSV 389  Caenorhabditi...
O35245        460 LIRYVTAFDFFLAAcEIIFCFFIIYYVVEEILEIRIHR-LSYFR-SFWncLDVVIVVLSVVAMVINIYRMSNAEGLLQFL 537  house mouse
A2A259        341 LIRYVNNWDFFIVGcEVVFCVFIFYYVVEEILEIHLHR-LRYLS-SVWniLDLVVILLSIVAVGFHIFRTLEVNRLMGKL 418  house mouse
Q8T8Z2        367 MLGNVETRSNSELLiLFVYTVLVILFARGVFTKIWHH--PAAAH-EAWtmVDLAIYILNVFLTVLAIMRDIETDALLQII 443  fruit fly
Q9VVZ8        362 FVEQLREFTKFGMLmVFVFVVTWLQFTKAFFLKVWYD--PRQLK-TLWvqVDAMIVALSLVVGMIMSVRDNLVQKMIKSV 438  fruit fly
Q9W4X5        368 LLENVDQMPYTGLLaLLIYVLVFIQFAQTLAVKLWYE--PHLLK-SVWnkLDLFIFMVNVLVVVLVVLRESLVASMMKKV 444  fruit fly
Q9NTG1       1954 LADFDRKASAEIYL-YVAILIFFLAYVVDEGCIIMQER-ASYVR-SVYnlLNFALKCIFTVLIVLFLRKHFLATGIIRFY 2030 human
XP_015297841 2877 LRRLSAGLSLPLLT-SVCLLLFALHFAVAEARTWHREGcWHVLRpRAW--ARWLLVVLTAATALVRLAQLGAADRQWTRF 2953 crab-eating m...
Q9Z0T6       1904 L-ADPEAFIPFHAVSRVDHFMRIILAFLLFLTILKTLRYSRFFYNVRLAQKAIQAALPGICHTALVVSIYSFMYVAFGYL 1982 house mouse
O08852       3957 VqDHPRHFTSFDQVAQLGSVARGLAASLLFLLLVKAAQQLRFVRQWSVFGKTLCRALPELMGATLGLVLLGVAYAQMAIL 4036 house mouse
Q95V80       2497 R-DESVRFVGFRTAATSDNALGYSLAVIIILSCVKFLYLLRLNPRMYLLTSVISDCYHEVIAFTFLIFILILSFAFPMTI 2575 purple sea ur...
Q9VK95        656 --HSDVTYQSLDVLCFWNIIYVDMMAILAFLVWIKIFKFISFNKTLVQFTTTLKRCSKDLAGFSLMFGIVFLAYAQLGLL 733  fruit fly
Q9U1S7        390 I-ENGLTNAPFDDVTSSENSYLNIKACVVFVAWVKVFKFISVNKTMSQLSSTLTRSAKDIGGFAVMFAVFFFAFAQFGYL 468  Caenorhabditi...
O35245        538 --EDQNSFPNFEHVAYWQIQFNNISAVMVFLVWIKLFKFINFNRTMSQLSTTMSRCAKDLFGFTIMFSIIFLAYAQLAYL 615  house mouse
A2A259        419 L-QQPDTYADFEFLAFWQTQYNNMNAVNLFFAWIKIFKYISFNKTMTQLSSTLARCAKDILGFAIMFFIVFFAYAQLGYL 497  house mouse
Q8T8Z2        444 EtATKGQYLDFQRPLRLHQMLFIVKGFLVCITTLRLWKVLQFASVFQHFTQTLFSAWRAVASLGVIILVVLMAIGITLAV 523  fruit fly
Q9VVZ8        439 EiAVVVDFLDFREPAQLAYLEDVVTGLAVALVTMRLWKVLQFSATFQLFTKTIAMAWDALLCTFVITVIFIIAIGIATVT 518  fruit fly
Q9W4X5        445 EgASKMEFIDFRRPSRMHQLTTITIGFLICITTLRLWRVLQFASVFKLFTRTLYLAWSAVASTAIAIVIFLIGFCFAVVT 524  fruit fly
Q9NTG1       2031 L-SNPEDFIPFHAVSQVDHIMRIILGFLLFLTILKTLRYSRFFYDVRLAQRAIQAALPGICHMAFVVSVYFFVYMAFGYL 2109 human
XP_015297841 2954 VrGRPRRFTSFDQVAQLSSAARGLAASLLFLLLVKAAQQLRFVRQWSVFGKTLFRALPELLGATLGLVVLGVAYAQLAVL 3033 crab-eating m...
Q9Z0T6       1983 VFGQHEWNYSNMIHATQTI-----FSYCVSAFQNTefsg-------nkvLGVLFLSSFMLVMICIFINLFQAVILSAYDE 2050 house mouse
O08852       4037 LISSGADTLYNMARAFLVLcpgarVPTLCPSESWY--------------LSPLLCVGLWALRVWGALRLGAILLRWRYHA 4102 house mouse
Q95V80       2576 MFGSNLPDYRDITKTALNL-----FITLPDNFVYEdlks------vqrvLGPLILLLFQFLSCYLFLDLLIAALNESMVT 2644 purple sea ur...
Q9VK95        734 LFGTKHPDFRNFITSILTM-----IRMILGDFQYNlieq------anrvLGPIYFLTYILLVFFILLNMFLAIIMETYNT 802  fruit fly
Q9U1S7        469 CFGTQIADYSNLYNSAFAL-----LRLILGDFNFSales------cnrfFGPAFFIAYVFFVSFILLNMFLAIINDSYVE 537  Caenorhabditi...
O35245        616 VFGTQVDDFSTFQECIFTQ-----FRIILGDINFAeiee------anrvLGPLYFTTFVFFMFFILLNMFLAIINDSYSE 684  house mouse
A2A259        498 LFGTQVENFSTFVKCIFTQ-----FRIILGDFDYNaidn------anriLGPVYFVTYVFFVFFVLLNMFLAIINDTYSE 566  house mouse
Q8T8Z2        524 PNGNNAVVFSHMVQSVVTC--------MWYSMGFNgdihpadffhggriLGILLYLALVFLLAIILMNVFASVIYDYFNE 595  fruit fly
Q9VVZ8        519 INGNYTSNFRDFPKGIVTV--------TCFAFGYTnlvyppdifyggewLGILLYTIMGFVVKYMLINLIVSMMRDQMAS 590  fruit fly
Q9W4X5        525 INGNYSSNFNKLVKSMVMC--------MCYSFGFSaqvkpselfhggkwLGILCYGVLAFVIIVLLINVFVSLINDYFTv 596  fruit fly
Q9NTG1       2110 VFGQHEWNYSNLIHSTQTV-----FSYCVSAFQNTefsn-------nriLGVLFLSSFMLVMICVLINLFQAVILSAYEE 2177 human
XP_015297841 3034 LVSSCVDSLWSVAQALLVLcsgtgLSTLCPAESWH--------------LSPLLCVGLWALRLWGALRLGAVILRWRYHA 3099 crab-eating m...
Q9Z0T6       2051 M 2051 house mouse
O08852       4103 L 4103 house mouse
Q95V80       2645 I 2645 purple sea urchin
Q9VK95        803 V 803  fruit fly
Q9U1S7        538 V 538  Caenorhabditis elegans
O35245        685 V 685  house mouse
A2A259        567 V 567  house mouse
Q8T8Z2        596 T 596  fruit fly
Q9VVZ8        591 V 591  fruit fly
Q9W4X5        597 a 597  fruit fly
Q9NTG1       2178 M 2178 human
XP_015297841 3100 l 3100 crab-eating macaque
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