3AYH,2CKZ


Conserved Protein Domain Family
RNA_pol_Rbc25
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pfam08292: RNA_pol_Rbc25 (this model, PSSM-Id:285491 is obsolete and has been replaced by 400543)
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RNA polymerase III subunit Rpc25
Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III.
Links
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Statistics
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PSSM-Id: 285491
Aligned: 24 rows
Threshold Bit Score: 118.16
Created: 26-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3AYH_B        79 PFRGEVMLGKIKSCSEEGIRVTISFFDD-IFIPKDMLFDPCVFRPDERAWVWKIege-----------dgsEGTELYFDI 146 Schizosaccharom...
Q0UVV8        79 PFRGEIIYGRIKSSSPDGIIIDLDFTSE-VFVPYQNLFENSSFSQAEGVWVWNS-----------------DGTELFLDK 140 Phaeosphaeria n...
Q4CPV8       116 PTPGARLRATISAQTREGIFLTLEFFQFvFFVPGDLLVAPSSYHEEKKCWVLHVeeeeeddveegeekgalESALNPYEN 195 Trypanosoma cruzi
Q5KAI3        50 PFVGEVIVGRVLSTTKTYIRVSLGFFQD-IYIVPSLLPPNSAYDPQQKAFFWVA-----------------IDDESTLTQ 111 Cryptococcus ne...
Q4PAG0        79 PFTQEVLTGKIKSSDEAGIRVSMGFFDD-IYIPYHLIPKPCAFDHQERAWFWLYearteqia--adpllsqPEERMYLDT 155 Ustilago maydis
Q017Z0        89 PFTGEVLEGKLESSDEHGAHVSIGFFDD-VFIPPSNMQDPSEWDEDEKAWIWDY-----------------NGERIKLEV 150 Ostreococcus tauri
Q23645        79 PFVDEVIEAKVIGSSRQGLCLTIQFFED-IFVPAEKLPEPHVFEEEGQVWYWEYaqe-----------dgePPAKLYMDP 146 Caenorhabditis ...
Q382L2       103 PTPGARVRATIGAQTREGIFLSLDFFQFvFFVPGDQLIAPSFFDEGNQCWMLRVddg------------tdEDAVNPYEK 170 Trypanosoma brucei
XP_001418348  81 PFAGEVIEGTLLSADAHGAHVSIGFFKD-IFVPPTNMQAPSEYDDDSKVWMWDYd-----------------GELMEMKV 142 Ostreococcus lu...
XP_001276540 102 PFKGEIMLGKISSATQQGIKIGVEFFND-ILVPPDLLLDGARFDIADQVWVWENe----------------DGSTFYFDI 164 Aspergillus cla...

3AYH_B       147 DEEIRFQIESEDFv-dISPKRNKn-----------------------aTAITGTEALESVSPYTLIASCSRDGLGIPAWW 202 Schizosaccharom...
Q0UVV8       141 GEPVLFRVEQEEWf-dQRPTIVQ-------------------------KDEQGNVIEERGTAWRVIGSMNQAGLGPTLWW 194 Phaeosphaeria n...
Q4CPV8       196 GDEVIVKVEHVIV---RELVDFHsnvgtnsqni------nniiinsgvSADGKEGSPTSQSPMEVRGSFVGTGLGPVLWF 266 Trypanosoma cruzi
Q5KAI3       112 EQLLNTVISDSIEwqdVRPTPQAmla-------------------emnGEAVEGKDPIEKAGFKILATIAESGLGVTAWW 172 Cryptococcus ne...
Q4PAG0       156 AEAVRFTVESDAFw-dSEPGPGAatrsad-------------satqnaLHQKEHTTKETKPHYSITASIAGSGLGLVSWW 221 Ustilago maydis
Q017Z0       151 GEKVRFRVVGSRFp-dSPKTAEEla---------------------slTADSGAKANGSFAPMLVVGDLNADGLGMCSWW 208 Ostreococcus tauri
Q23645       147 GKIVRFRVTEIIFk-dLKP-------------------------------ELTHEERKTEKSMEIKGTMASTGLGCIGWW 194 Caenorhabditis ...
Q382L2       171 GDEVVVRVDRVIV---RDPVDLHraegargstsnamgnadgtrsatggLKDSGREPQVEKWPMEVYGSFVGTGLGPVVWF 247 Trypanosoma brucei
XP_001418348 143 GERFRFKVVAVRFp-eSPKTAEElasl-----------------tresGAAPRDGGDAAFAPMLVIADINEDGLGLCSWW 204 Ostreococcus lu...
XP_001276540 165 GEVVRFRVEMEEWh-dQIPNAPDl---------------------------GDGAAIERKPPYSIIGSMQMAGLGPVSWW 216 Aspergillus cla...
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