1JV2


Conserved Protein Domain Family
Integrin_alpha2

?
pfam08441: Integrin_alpha2 (this model, PSSM-Id:285619 is obsolete and has been replaced by 462478)
Click on image for an interactive view with Cn3D
Integrin alpha
This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of pfam01839 repeats and to the N-terminus of the pfam00357 cytoplasmic region. This region is composed of three immunoglobulin-like domains.
Statistics
?
PSSM-Id: 285619
Aligned: 38 rows
Threshold Bit Score: 339.284
Created: 27-Jun-2015
Updated: 5-Aug-2015
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1JV2_A        437 ARPVITV-NAGLEVYPSIlNQDNKT-CSLPgtalKVSC--FNVRFCLKAD---GKGV-LPRKLNFQVELLLDKLk-QK-G 506  human
P23229        503 SRPVINI-QKTITVTPNRiDLRQKTaCGAP----SGIC--LQVKSCFEYT---ANPAgYNPSISIVGTLEAEKErrKS-G 571  human
P26007        461 SRPVISI-TKSITVQPDKlDLKKKN-PEDP----SEIW--MDVKACFQYT---ANPRnLNPRIKINYTFEAENErrQL-G 528  chicken
P13612        463 TRPVVIV-DASLSH-PESvNRTKFD-CVENg--wPSVC--IDLTLCFSYK---GKEV--PGYIVLFYNMSLDVNr-KA-E 528  human
CAG09957      442 ARPVISI-RRDVKVSPQEvDLTVKT-CGDS------IC--VAVDACFTYT---ANPAsYNPKLTVGFSVESDVEr-RKqG 507  spotted green...
XP_009290261  468 SRSVINI-EKTVTTTPKElDLTKKN-CNNG----NNIC--LDVKACFKFS---VKPKtYNPTLKVAYTIRVESEr-KKlN 535  zebrafish
CAG01993      443 ARPVINV-KKDIQLSTKEiDLTKKN-CGNTf------C--LEVKACFSYT---ANPRsYSPRLTVVYSLEADAEnrKK-G 508  spotted green...
CAG08300      486 ARPVVHI-GSTLQVTPNNiDRDKIK-EQCDms-lP-SCsnFAARACFSYT---AHPEsFSPKLILDYTFEADIKr-KKaR 557  spotted green...
CAG04405      379 ARPVVHL-TTEFRVEPKIvDPN--S-CT--------AC--ITATLCISFTlsnGNKD-FKKDITVNYTVEADSGr-K--- 439  spotted green...
XP_007615455  426 ARPVINIlQRSLVARPPVlDP--SL-CTAT------SC--VQVELCFAYNqsaGNPN-YRRNITLAYTLEADRDr-RP-P 491  Chinese hamster
1JV2_A        507 AIRRALFL--Y----SRSPSHSKNMTISRGGLMQCEELIAYLrDEseFRDKLTPITIFMEYRL--------D-YRTAADT 571  human
P23229        572 LSSRVQFRn-Q----GSEPKYTQELTLKRQKQKVCMEETLWLqDN--IRDKLRPIPITASVEIqe----psS-RRRVNSL 639  human
P26007        529 LPSRVRFK--D----YLSDQFTASTTLIGQNSKRCVTAKLVLqEK--IKDKLRPIPIAVSVNIaglesgssS-TRKERAL 599  chicken
P13612        529 SPPRFYFS--S----NGTSDVITGSIQVSSREANCRTHQAFMrKD--VRDILTPIQIEAAYHLgph---viS-KRSTEEF 596  human
CAG09957      508 LPSRLAFL--NrslsDAEHQLNGTLELRSRKQEACIRILGTLkEN--IRDKLRSIPIEVSTEIld----trR-SKPKNSL 578  spotted green...
XP_009290261  536 LPSRVIFNprS----NNDYESTGIVELKGQGTESCIYRNLMLqET--LKDKLRGIPIEVSVEIlnq---nkR-RRRQAAL 605  zebrafish
CAG01993      509 LISRAVFI--Eg--aTKSYNSRGTVVLNSQGMVECVNRQLAIqEN--IKDKLSGIPIDVSVEIqd----tkR-KRRQSSF 577  spotted green...
CAG08300      558 LPPRVDFL--G--------VPRGRLELPGQKRKICTDIELRLlRD--FKDWLHAIPISVTASLg---------DSTQWTS 616  spotted green...
CAG04405      440 RSPRVHF---Q----DNQDDTFTGSLSLSSSSSNCQTLKLIVlPP--VMDKLKPVDFTLSVSLs------ePkPKSRQSL 504  spotted green...
XP_007615455  492 RL---RFA--R----SQSAVFHGFFSMP---ETHCQTLELLLmDN--VRDKLRPIVIAMNYSLpl----rmP-DRLKLGM 552  Chinese hamster
1JV2_A        572 TGLQ--PILNQf-TPANISRQAHI-LLD-CGEDNVCKPKLEVSVDSDQKK-----------------IY----------- 618  human
P23229        640 PEVL--PILNSd-EPKTAHIDVHF-LKEgCGDDNVCNSNLKLEYKFCTREgnqdkfsylpiqkgvpeLV----------- 704  human
P26007        600 PDLI--PILNSn-ESETKITKVEF-LKEgCGEDNECHSNLKLQYRFCTREgnedrfty--lpiengiPV----------- 662  chicken
P13612        597 PPLQ--PILQQkkEKDIMKKTINF-ARF-CAHEN-CSADLQVSAKIGFLKphen----------ktyLA----------- 650  human
CAG09957      579 PPLM--PILDAs-QPSKDVVMVNF-LKEgCGSDHVCQSNLRMEYKLLYKEnn-------------qdVYspvptednipv 641  spotted green...
XP_009290261  606 PNLL--PILDSn-QEATTVAMVQF-IKEgCGADHLCQSDLQLQYKFHTREpnkdnffpfdeekgvpiLS----------- 670  zebrafish
CAG01993      578 SQLP--PVLDAn-VNNMVRSMVPF-RKEgCGNDNICQSNLALSYRYGYMAaddisfvplelengipvIK----------- 642  spotted green...
CAG08300      617 ERVT--PVLDLf-QPKYTVSEINItNRG-CGSDNICQSNLSLEYRFCSRQmensksvfrslsrkdgvAV----------- 681  spotted green...
CAG04405      505 QNLDsfPILSHd-QKLTEKTEINF-QKE-CGADNKCSSNLQMSAKFIDDSsk-------------pyPR----------- 557  spotted green...
XP_007615455  553 RPLDayPVLNQa-QALENHTEVHF-QKE-CGPDNKCDSSLQMRAAFVSEQlq-------------plSR----------- 605  Chinese hamster
1JV2_A        619 --Ig---------DD-NPLTLIVKAQN----------Q-G-EGAYEAELIVSIPLQADFIGVVrnneal--arlscAFKT 672  human
P23229        705 --Lk---------DQ-KDIALEITVTNspsnprnptkD-G-DDAHEAKLIATFPDTLTYSAYRelrafp-ekqlscVANQ 769  human
P26007        663 --Lv--------lKDqKDIALEITVTNnpsdarnpqkD-G-EDAYEAKLIATFPDSLTYSAFRemrgyp-ekqltcGANQ 729  chicken
P13612        651 --Vg---------SM-KTLMLNVSLFN----------A-G-DDAYETTLHVKLPVGLYFIKILeleek----qincEVTD 702  human
CAG09957      642 fhLt--------yQR-KDLAVQVTVSN----------EkG-DDAYEAKLLTTFPTALSYSGVRfspppa-ekqiicTAGQ 700  spotted green...
XP_009290261  671 --Ls---------DQ-KEIALEIKAVN----------L-G-EDAYETQLTASFPKSLSYSAVRtqsgd---kqiscLVNQ 723  zebrafish
CAG01993      643 --Ls---------NQ-KNVALEVNVTN----------LnG-DDAYEASMVAAFLSSLTYSEFRvplnvslkhpvscTANK 699  spotted green...
CAG08300      682 --It--------pTE-EDIALEMTVTN----------R-GgDDAHQTRSIISLPDTLHYSSVVttase---pkvdcTAND 736  spotted green...
CAG04405      558 --QgnfqvlqynsSV-KVVRLLVEVTNvps----agrL-A-EDAHQAALNVTIPDALRYSAVsks--------vqcRFd- 619  spotted green...
XP_007615455  606 --Lqy------srDT-KKLFLSINVTNtps----rerA-G-EDAHEALLTLEVPPALLLSSVRpsg--------tcQANE 662  Chinese hamster
1JV2_A        673 ENqtrQVVCDLGNPMKA-GTQLLAGLRFSVHQQSEMDTSVKFDLQIQSSNLFDK---VSPVvsHKVDLAVLAAVEIRGVS 748  human
P23229        770 NGs--QADCELGNPFKR-NSNVTFYLVLSTTEVTFDTPDLDINLKLETTSNQD----NLAPitAKAKVVIELLLSVSGVA 842  human
P26007        730 NGs--QAECELGNPFKR-NSNVTFYLILSTTKVNVDTTDLDINLKLETTSTQV----NSTAitASAKVVLELLLSLTGVA 802  chicken
P13612        703 NSgvvQLDCSIGYIYVDhLSRIDISFLLDVSSLSRAEEDLSITVHATCENEEEMdnlKHSRvtVAIPLKYEVKLTVHGFV 782  human
CAG09957      701 NGs--QADCELGNPFKR-DSQVTFYIILSTKKMPLDTTEVDLDLQLQTTSVQH----NISPvkAKAKILIEFPLSVSGEA 773  spotted green...
XP_009290261  724 NGs--QADCDLGNPFKK-DAETTFYIILSTGGISLDTTEIEIDLKLKTTSEQK----QLQAvkAKAIVKIQLLLSLSGVA 796  zebrafish
CAG01993      700 NGs--LVDCELGNPFKR-NSEAIFYIIMGTSGISLDTNEVEVELKFETTSEQQ----ALMAvkAKAKVAILLQLSVSGQA 772  spotted green...
CAG08300      737 KGt--LIDCELGNPIEK-DAEVTFYVMLTTSGISLSTKAVNISLQLQTTSTQV-----LKPveASAKVFFELKLQLYGVA 808  spotted green...
CAG04405      620 ----gTLICDLGNPVKG-NEKISVRIKFETA-IDLNTRELEAQLMLSTLSEQT----DLMPvaVALMIENTIIPSFSIVH 689  spotted green...
XP_007615455  663 -----TILCELGNPFKR-NQRMELLIAFEVIGVTLHTRDLKAQLQLSTSSHQD----NLQPmtLILQVDYTLQASLSLMT 732  Chinese hamster
1JV2_A        749 SPDH-V-Fl-PIPNWEHKEnpeTEEDVGPVVQHIYELRNNGPS--SFSKAMLHLQWPYKYNNNT--LLYILHY--D-IDG 818  human
P23229        843 KPSQ-V-YfgGTVVGEQAMk--SEDEVGSLIEYEFRVINLGKPltNLGTATLNIQWPKEISNGKw-LLYLVKVesK-GLE 916  human
P26007        803 KPSQ-V-YfgGNIVGESAMk--SEDNIGNLIEYEFRVTNLGRPlkTFGTASLDIQWPKEISNGKw-LLYLMKIesK-GLE 876  chicken
P13612        783 NPTS-F-V-----YGSNDEn-ePETCMVEKMNLTFHVINTGNS--MAPNVSVEIMVPNSFSPQTdkLFNILDVq----TT 848  human
CAG09957      774 RPNL-VsFg-GLVRGESAMk--TEEEVGSLVRFTFRINNLWKS--PA-KASLHIHWPKTNKDGKw-LLYLVGIssS-GPQ 844  spotted green...
XP_009290261  797 KPSQ-V-FftGEVKGESAMkmaG--DVGSPIDYEFRVTNLGKPlkSFGRASMIIQWPKHNSQGKw-LLYLMKMt-StGLD 870  zebrafish
CAG01993      773 LPSQ-AyFs-GKVIGEEAIk--TESEMGSAITHRFKIINLGKS--LTEAAVLEIDWPKETADEKw-LLYLMNIslS-GVK 844  spotted green...
CAG08300      809 RPSQ-VsFg-RSLEGKSTIn--SVEEIGALVQYEFRITNLGRSlkYFTNASLNIFWPKENSLGKw-LLYLTQTsnT-GVQ 882  spotted green...
CAG04405      690 PLVQ-TkFg-GTVKGESAMvntS--DIGSLVEFTFKVDITGQPlgELGTLAVEFDWPFEVPNGKw-LLYLTKIv-VsGQS 763  spotted green...
XP_007615455  733 HRLQsF-Fg-GTVMGEAGMk--TEEDVGSPLKYEFQVSPVGDGlaALGTLVLGLEWPYEVSNGKw-LLYPTEIt---IHS 804  Chinese hamster
1JV2_A        819 PMN--CTSDME-INPLRikissLQTTEKNDTVAGQGERDHLITKRDLALSEG----------D---IH---------TLG 873  human
P23229        917 KVT--CEPQKE-INSLN-----LTESHNSRKKREITEKQIDDNRKFSLFAERky----------------------qtLN 966  human
P26007        877 KVS--CQPQNE-INVLH-----V-------AESHNSRRKREIAEKQLTDSKTfs------lfSerkYK---------TLD 926  chicken
P13612        849 TGE--CHFENY-QRVCA-----LEQQKSAMQTLKGIVRFLSKTDKRLLYCIKad-------------------------- 894  human
CAG09957      845 EVL--CSPLSE-VNPLK-----LTQESDVSRPKREIGERKPVAKASLLPSKNk------------------------LLS 892  spotted green...
XP_009290261  871 SLS--CTNSDE-VNKLG-----L-------KELSVSRTKREVGETSAAEGKTaf------ftDkrkYT---------LLS 920  zebrafish
CAG01993      845 QIN--CSPKGE-INPR---------QKAPRSRRAAKNSLEGDKGTISRYTDEk------------kSQ---------TLS 891  spotted green...
CAG08300      883 SVP--CSPVKE-INPLK-----NVKGL-SRKKREAELEALTSGDFSFLPTKRk-------------YK---------TLT 931  spotted green...
CAG04405      764 KME--CNPPDV-VNPLN-----L--SLSEPSRRRTKRQVLVDDGDTVQQQIGnp------qaA---ITlvtsprksfLME 824  spotted green...
XP_007615455  805 NGSwpCQPPGNlVNPLN-----LILSEPGDKPHSPQRRRRQLDPGGDQGSPPvtlaaakkakS---ET---------VLT 867  Chinese hamster
1JV2_A        874 CG-VA-QCLKIVC 884  human
P23229        967 CSvNV-NCVNIRC 978  human
P26007        927 CKvNA-QCVDIRC 938  chicken
P13612        895 -----pHCLNFLC 902  human
CAG09957      893 CGrGs-RCVVLEC 904  spotted green pufferfish
XP_009290261  921 CDdGa-ECITFIC 932  zebrafish
CAG01993      892 CDqGa-KCVKIKC 903  spotted green pufferfish
CAG08300      932 CAdGl-RCVEICC 943  spotted green pufferfish
CAG04405      825 CSkGtaRCVSFTC 837  spotted green pufferfish
XP_007615455  868 CAsGraRCVWLEC 880  Chinese hamster
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap