Conserved Protein Domain Family
KfrA_N

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pfam11740: KfrA_N (this model, PSSM-Id:288575 is obsolete and has been replaced by 432038)
Plasmid replication region DNA-binding N-term
The broad host-range plasmid RK2 is able to replicate in and be inherited in a stable manner in diverse Gram-negative bacterial species. It encodes a number of co-ordinately regulated operons including a central control korF1 operon that represses the kfrA operon. The KfrA polypeptide is a site-specific DNA-binding protein whose operator overlaps the kfrA promoter. The N-terminus, containing an helix-turn-helix motif, is essential for function. Downstream from this family is an extended coiled-coil domain containing a heptad repeat segment which is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning.
Statistics
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PSSM-Id: 288575
Aligned: 114 rows
Threshold Bit Score: 31.827
Created: 28-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q3JF63        11 RERITSTADELYEQAnrEAfPTVDQVRRVA--RADMNTTSAVMREWRRQQTVQV--APVAV--TVPETISQANat----a 80  Nitrosococcus o...
Q7DAP1         8 PEQIIEAGLALQAEG--RN-ITGFALRNQVg-GGNPTRLRQIWDEYQASQSTVV--TEPVA--ELPVEVAEEVkavsaal 79  Salmonella ente...
WP_015203589   8 KEQVYAACEMLISKD--EK-LTLDGIRKHIg-GGSKTTINKWFKQYKDEFPNKVydAARVI--PMPDIVQEQYq------ 75  Crinalium epips...
WP_012801193   8 QYDVEKAYKSLTSQG--VNnPSIDAIRAELgnTGSKTTISKYLKDIKKTRTNGT--LTEVK---VSDAIGHLVs------ 74  Kangiella koree...
CCA86612       8 RLDVKRARDSLLAQG--QH-PSIDGIRIALgnTGSKTTIHRYLKELEEEEGSAL--K-RAG--TTSDAILDLI------- 72  Ralstonia syzyg...
WP_014133090   8 QEEIIKAGQELQESG--RN-ITGFALRTKVg-GGNPSRLKQVWDEYVSSQSVVK--TEPVA--ELPIEVADEVaavtksl 79  Methylomicrobiu...
WP_041702695   8 PEEIIKAGKELQASG--RN-ITGFALRKQVg-GGYPARLKQVWDEYVSSQDEQQ--NESVA--ELPVEVAETVadmtkql 79  Prosthecochlori...
WP_041656586   8 NQEIIDAGKRLQSTG--KN-ITGYGLRRILg-AGDPKRLKSVWDEFSTKDKIDR--NTDL---RLPAELEDLVaelennl 78  Marinobacter hy...
WP_011783433   8 NEAIIAAGKKLQEAG--RR-ITGFGLRKMTg-GGSPDRLLRVWEEHCEAERNQG--RPSSRtqGLPKDIEHSLkd----l 77  Marinobacter hy...
WP_012979609   8 DEAIIEAGRALVEQG--RN-VTGFALRQVIg-SGAPNRLKTVWDRHQAQGLPQP--EPR----PLPDGIVNVLdrletey 77  Allochromatium ...
Q3JF63        81 lATLW----QEAQK-------LAN----ESLQAAQSSWEAEQAELDAMRaelaDAY-ETQATELDQ 130 Nitrosococcus oceani ATCC 19707
Q7DAP1        80 sERIT----QLATE-------LND----KAVRAAERRVAEVTRAAGEQT----AQAeRELADAAqt 126 Salmonella enterica subsp. en...
WP_015203589  76 -K-LWaltyAMAED-------KAEsdyvKTLEDENGELKEKNLELEQTK----AEL-KQLKEsyem 127 Crinalium epipsammum
WP_012801193  75 --QLA----ARLNA-------EAN----KTIEDMEQAFENERQAWNQEK----SGL-EESLSQATE 118 Kangiella koreensis
CCA86612      73 -GRLA----ARLHE-------EAQ----VVIDQQVAAATAQRQQVRAEA----DKL-SADLTALRT 117 Ralstonia syzygii R24
WP_014133090  80 tDRLA----SLAVE-------LND----KAVKAAERRVAEVIRTAGEQR----EQAeRELADAsqt 126 Methylomicrobium alcaliphilum
WP_041702695  80 tERIH----SFAVE-------LND----KAVRVADRRVADVTRRAEEQR----QQAdRELADAset 126 Prosthecochloris aestuarii
WP_041656586  79 vEQIR----PLTVQ-------IYD----GALKAAQRQVSETSRELKQLK----LEI-EAeildana 124 Marinobacter hydrocarbonoclas...
WP_011783433  78 aSPLM----DCVRQ-------LAL----ELYEKSETHIQQQTASDMEMS--------RKEQEKARA 120 Marinobacter hydrocarbonoclas...
WP_012979609  78 sKQLY----KLALEiqalahqEAE----QTLQAGRDQWQHDRQALEQEV----EDA-SQTVETLEQ 130 Allochromatium vinosum
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