3DZU


Conserved Protein Domain Family
Nuc_recep-AF1

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pfam11825: Nuc_recep-AF1 (this model, PSSM-Id:288658 is obsolete and has been replaced by 463363)
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Nuclear/hormone receptor activator site AF-1
Nuclear receptors (NRs) are a family of ligand-inducible transcription factors, and, like other transcription factors, they contain a distinct DNA binding domain that allows for target gene recognition and several activation domains that possess the ability to activate transcription. One of these activation domains is at the N-terminal, although there are two distinct motifs within this domain, between residues 20-36 and between 74 and the end of this domain, which are the binding regions. One of the co-activators is TIF1beta, which appears to bind at the first motif.
Statistics
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PSSM-Id: 288658
Aligned: 19 rows
Threshold Bit Score: 102.573
Created: 28-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3DZU_A        25 TSPTGRGSMAAPS-LHPSLG--Pgi-gsP-----GQLHSPISTLS--SPINGMGPPFSVISSPMGPHSMSVPTT-PTLGF 92  human
XP_006640727  23 SSPNSHRAMNTPT-LHPSLM--GsgispSslgssGQLHSPISTLS--SPMNGLGSPFSVISSPMGPHSMSVPST-PGMGF 96  spotted gar
XP_012403075  28 SPSPALATGKSPD-SHSNYI--EapvsvP-----RTLASPLNAIA--SPLNALGSSYRVITSAIGPHSLSLATS-PGVNM 96  Tasmanian devil
ADZ45552      28 GLSSGLPTGSPVVeGPPSYL--EppgsaA-----RALPSPMGAVG--SPVSALGSPYRVIASSLGSHPVALSSA-PGMNF 97  zebra finch
XP_010714042  28 spssslsvgsTVD-GHPNYL--EaptnaS-----RALPSPMNTIG--SPVNALGSPYRVIASSIGSHPVALSSSaPGMNF 97  turkey
XP_004027871  28 SPSAALSTVKPMD-SHPSYT--DtpvsaP-----RTL----SAVG--TPLNALGSPYRVITSAMGPPSGALAAP-PGINL 92  western lowland...
XP_008303087  59 GSPTSHRGM------HPSLLs-PtsmgpS-----GSLHSPISTLS--SPMNGLASPFSVISSPMGPHSMN---S-PGMGY 120 bicolor damselfish
XP_004916703  21 NSSGLRGSMTAPL-LHPSLG--NsginnS-------LGSP-TQLH--SPLNGMGPPFSVISPPLG-PSMPIPST-PGLGF 85  western clawed ...
XP_007243934  59 sspTGHRGMGPHP-LHPSLLtpSsmgstP-----GHLHSPI---------NGLASPFPVISSPMGHPSMTGPSS-TSMAF 122 Mexican tetra
XP_011615675  10 pdsssvssppsGQ-RSPPLV--PsaaasM-----TSLP-PITTTGvsSPISSIDSPFSVISSSMGSPC--LPGT-PSVGY 77  torafugu
3DZU_A        93 STG-SPQLSSp-----MnPVSSSEDIKPPLGLNGVLK--VPAHPSGN 131 human
XP_006640727  97 GPSvSPQLNSp-----MnPVSSSEDIKPPLGLNGVMK--VPAQPSGT 136 spotted gar
XP_012403075  97 VGPpSSQLNV------MnNVRSSDDVKPLPGIQGMGTmsYPSTSPGS 137 Tasmanian devil
ADZ45552      98 VAHaSPQLNV------LnNVSSSEDVKPLPGLPGMGNmnYPSTSPGS 138 zebra finch
XP_010714042  98 VTH-SPQLNV------LnNVSSSEDIKPLPGLPGIGNmnYPSTSPGS 137 turkey
XP_004027871  93 VAPpSSQLNV------VnSVSSSEDIKPLPGLPGIGNmnYPSTSPGS 133 western lowland gorilla
XP_008303087 121 GPSvSPQLNSp-----MnSVSSTEDIKPPLGLNGVMK--VPAQPSGT 160 bicolor damselfish
XP_004916703  86 GTG-SPQIHSp-----MnSVSSTEDIKPPPGINGILK--VPAHPSGP 124 western clawed frog
XP_007243934 123 GPSlSPQLSSp-----MiSVSSPEDIKPPLGLNGVMK--VPAQPTGT 162 Mexican tetra
XP_011615675  78 GPIsSPQINStvsmsgLhAVSSSDDVKPPLGLKQL-----SSHSQGP 119 torafugu
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