Conserved Protein Domain Family
DUF4585

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pfam15232: DUF4585 (this model, PSSM-Id:291885 is obsolete and has been replaced by 464574)
Domain of unknown function (DUF4585)
The function of this protein domain family is yet to be characterized. It is putatively thought to lie in the C-terminal domain of the DNA nucleotide repair protein, Xeroderma pigmentosa complementation group A (XPA). The function of XPA is to bind to DNA and repair any mismatched base pairs. This domain family is often found in eukaryotes, and is approximately 70 amino acids in length. There is a conserved DPE sequence motif. In humans, this protein is encoded for in the chromosomal position, Chromosome 5 open reading frame 65. Mutations in the gene lead to myelodysplastic syndromes, where there is inefficient stem cell production in the bone marrow. This suggests that the protein may have a role in forming blood cells.
Statistics
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PSSM-Id: 291885
Aligned: 22 rows
Threshold Bit Score: 78.5108
Created: 17-Jul-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_007249599  855 PFPVTQRKLLQDPNSGQYFMVDMPVpHVK----TKMFFDPETGKYVQLNVH-Qr-TQSALSQPESVEVLNHSYVV----- 923  Mexican tetra
XP_011490829 1135 aAPQTQRKMLLDPTTGHYYLVDTPL-QVT----TKKLFDPDTGQYVEVPMP-H--S--PVAPVTPVHLSLSPLAL----- 1199 Japanese medaka
CAG03738     1027 gdAQTQRKMLLDPTTGHYYLVDTPF-QPA----TRRLFDPETGQYVDVPVP-Rp-AAAHVAPISPVSLSVSPLTL----- 1094 spotted green...
XP_005325867 1601 PPQQTQRKMLLDVTTGQYYLVDTPV-QPM----TRRLFDPETGQYVDVPIT-S-----QQQAVTPMSLPVPPLAL----- 1664 thirteen-line...
XP_006632175 1248 QYNQSPRKVLLDPETGKYFYIDMPV-QPL----RKMLYDPETGQYVEVLIPqQ--ALSHSGVYQNPASPYSSFMN----- 1315 spotted gar
XP_005161364 1168 SVAASSRQLLLDPETGRYFYVDMPQ-LPQ----RKMLFDPETCQYVEVLLPqQ--ALPSAVIPTPCAIPFASLHI----- 1235 zebrafish
XP_007255123 1177 HFQATQRKMLLDPTTGNYYLVDTPV-QPA----TRRLFDPETGQYVDL-------PMPPQPPMTPVHMPISPLAL----- 1239 Mexican tetra
XP_008116483 1475 PPPQTQRKVLLDLSTGQCYVVDAPL-QQQqqpqKRRLFDPETGQYVEVPFP-GaqQPPPPAAMAPMTLPISSLTLgpaaa 1552 green anole
CAF99147     1224 tYGQTPRRVLLDPETGKYFYIEVPV-QPL----RKMLFDPETGQYVEVLIPqQ--AMSHSGLYPPSAAPYPPLHN----- 1291 spotted green...
XP_008513806  846 PGAARPGKVLVDPESGRYYFVEAPR-QPR----LRLLFDPESGQYVEVLLP-P--SPQG-----PTRRVYTPLAL----- 907  Equus przewal...
XP_007249599  924 -------------YPGFLP 929  Mexican tetra
XP_011490829 1200 -------------SPPAYT 1205 Japanese medaka
CAG03738     1095 -------------GPAAYA 1100 spotted green pufferfish
XP_005325867 1665 -------------SPGAYG 1670 thirteen-lined ground squirrel
XP_006632175 1316 --------------PGMYS 1320 spotted gar
XP_005161364 1236 --------------PPMYT 1240 zebrafish
XP_007255123 1240 -------------SPGTYG 1245 Mexican tetra
XP_008116483 1553 gggygapaaaymiYPGFLP 1571 green anole
CAF99147     1292 --------------PNMYA 1296 spotted green pufferfish
XP_008513806  908 -------------GPNLYP 913  Equus przewalskii
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