1RPN,4EGB,1BXK


Conserved Protein Domain Family
GDP_Man_Dehyd

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pfam16363: GDP_Man_Dehyd (this model, PSSM-Id:292973 is obsolete and has been replaced by 465104)
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GDP-mannose 4,6 dehydratase
Statistics
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PSSM-Id: 292973
Aligned: 269 rows
Threshold Bit Score: 217.397
Created: 1-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1RPN_C        18 LVTGITGQDGAYLAKLLLEKGYRVHGLVARR-SSDTR-WRLRELG------IEGDIQYEDGDMADACSVQRAVIKAQPQE 89  Pseudomonas aer...
Q3SPY1         7 LVTGAAGFIGSHLVEELVRRNLTVRAFVHYN-SMGSR-GWLDmsp----ryIRDALDVFAGDIRDPNGVRDAMKGC--DA 78  Nitrobacter win...
BAH39011      13 LVTGASGFVGSWLLPALSAEGADVFGLTMTPdADVPA-GRGVPV-------MPTSIQWRSGDLRDDRFVQRVVDEAAPDV 84  Gemmatimonas au...
WP_013563842   8 LVTGAAGFIGSHLVERLARDGHRVRAFIRYN-GRDDR-GCLEWLEpdvlaqVE----VVRGDLKDPEAVRRAVRGC--SR 79  Isosphaera pallida
WP_011958761   8 LVTGAGGFIGSHLVEALVARGFRVRAFVRYN-GRGDP-GLLRDLPsdmraqIE----IIFGDLRDSHAVHEATRGVD--T 79  Roseiflexus sp....
WP_011721866   9 LVTGAEGFIGSHLTERLVELGAEVTALVQYN-SFNNW-GWIDTFDk----nVKDNIKVITGDVREYDSVKRMVSGQ--EV 80  Clostridium novyi
WP_013718984  11 LVTGAGGFIGSHLIERLIDLGADVKGFARYN-SRNDW-GLLEIIps---qkLD-SLQIISGDLQDYDAVFSAVRDVD--V 82  Methanosaeta co...
WP_041262873   9 LVTGADGFIGSHLTETLVRQGYEVRPFVFYN--SFNSwGWLDqap----eeIRKNLDVFAGDIRDPHGVRTAMKG--CGS 80  Geobacter bemid...
XP_001837374  99 LVTGGAGFVGSHLVDRLMLLGHEVTVIDNFF-TG-SK-TTVSHWIgh------pnFEMVRHDVVEAF-------MIECDQ 162 Coprinopsis cin...
WP_011524413   4 LITGGAGFIGSHLAEKLLSRGDEVHI-IDDL-STGTI-ANIQHLKssplfhY------HIDTITNQRLMTELVDLCDIT- 73  Candidatus Kori...
1RPN_C        90 VYNLAAQSF-VGASWNQPVTTGVVDGLGVTHL---LEAIRQFS--PETRFYQASTSEMFGLIQA--ERQDE-----NTPF 156 Pseudomonas aer...
Q3SPY1        79 VFHLAALIA-IPYSYHSPDTYVDTNIRGTLNV---VQAARDLGvaHVV---HTSTSEVYGTAQF--VPITE-----GHPL 144 Nitrobacter win...
BAH39011      85 VIHLAAISH-LPTAAADPAAAWDINVTATARLlhhLDRIRQEGraDPVIL-LAGSAEQYGRDAShgALLSE-----DARQ 157 Gemmatimonas au...
WP_013563842  80 VFHLGALIA-IPYSYENPLDVIQTNVEGTAHV---LNACRDSDslDRVV--LTSTSEVYGTAQR--VPIDE-----SHPL 146 Isosphaera pallida
WP_011958761  80 IFHLGALIA-IPYSYVHPRETVETNIIGTLNV---LEAARAHGvrRV---VHTSTSEVYGTARF--VPITE-----EHPL 145 Roseiflexus sp....
WP_011721866  81 IMHLAALIA-IPYSYLSPMAYVRTNVEGTTNI---LEACRDEK--NIEKIVHTSTSETYGTALY--VPIDE-----KHPM 147 Clostridium novyi
WP_013718984  83 IFHLGSLIS-IPYSYIRPRDTIENNILSTLNI---LTAARDLGv---eKVVHTSSSEVYGTALY--VPIDE-----KHPL 148 Methanosaeta co...
WP_041262873  81 VLHLAALIG-IPYSYHSPDTYVDTNIRGTLNI---VQAAREEGv---eKVIHTSTSEVYGTARF--VPITE-----EHPL 146 Geobacter bemid...
XP_001837374 163 IYHLACPASpPHYQFN-AVKTIKTSFMGTLNM---LGLAKR----TKARFLISSTSEVYGDPEV--HPQPEdywghVNPI 232 Coprinopsis cin...
WP_011524413  74 -YHLAAAVG-VRLIVESPVRTMETNIRGTEIV---LALAe----rKRKRVLITSTSEVYGKREH--IPFRE-----DDDL 137 Candidatus Kori...
1RPN_C       157 Y--P----RSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTR-KVTDAVARIKLGK-QQELRLGNVDA 228 Pseudomonas aer...
Q3SPY1       145 Q--G----QSPYSASKIGADQIALSFERSFGTPVTVVRPFNTYGPRQSARAVIP-AIITQIA----GG-ARVIRLGSTEP 212 Nitrobacter win...
BAH39011     158 A--P----RTVYAATKAAQEVLAFQCWRATGLRTMVARSFNHSGPGQPPRFLLPaLVARARGLTDAAP-GTPMPVGNLSP 230 Gemmatimonas au...
WP_013563842 147 V--G----QSPYAASKIGSDALGIAYHRSFGTPVTILRPFNTFGPRQSTRAIVP-TI---LSQALVGS---TLRLGSLAP 213 Isosphaera pallida
WP_011958761 146 Q--G----QSPYSASKIGADKLVESFHLSFGVPTVTVRPFNTYGPRQSARAVIP-TIITQA----LT--RSVVRLGDLRP 212 Roseiflexus sp....
WP_011721866 148 Q--G----QSPYSASKIGADKMAESFYRSFNLPIATIRPFNTYGPRQSARAV----IPTIISQILAGK-RE-IKLGSLTP 215 Clostridium novyi
WP_013718984 149 Q--G----QSPYSASKIGADKIAESFYCSFDLPVATIRPFNTYGPRQSARAIIP-TIITQA----I-E-QEKIKLGSLFP 215 Methanosaeta co...
WP_041262873 147 H--G----QSPYSASKIGADQIALSFYSSFGTPVTVVRPFNTYGPRQSARAVIP-TI---ITQIAAGR-EE-IRLGSLHP 214 Geobacter bemid...
XP_001837374 233 G--P----RACYDEGKRVAETLTYGFHQQDGVDVRVARIFNTYGPRMNP-YDGR-VVSNFIVQALKGE--DMTVYGDGKQ 302 Coprinopsis cin...
WP_011524413 138 ImgPtskgRWSYACSKAIDEFLAIAYWKEKKVPTVIVRLFNTVGPRQTGRYG-M-VIPNLVTQALTGEdMTVFG-DGLQ- 213 Candidatus Kori...
1RPN_C       229 KRDWGFAGDYVEAMWLML-QQDKA--DDYVVATGVTTTVRDMCQIAFEHVGLDY-----------------RDFLKIDPA 288 Pseudomonas aer...
Q3SPY1       213 TRDFSFVSDTVAGF---I-AADEQ--R---AAIGEVVNLGSGFEVS---IGNTAeliae--------imgvEIQIELDQS 272 Nitrobacter win...
BAH39011     231 IRDFLHVCDVVAAYISLCrQGTPG--EAYNVASGTGWSVREVLDRVVARAGIR-------------------AVPTEDPS 289 Gemmatimonas au...
WP_013563842 214 RRDLTEVSDTVAGFVGIA-ECDEA--LGRVVNIGR---------GSDVSIGELVeltgq--------vlgrRLSVETDPQ 273 Isosphaera pallida
WP_011958761 213 TRDLNYVSDTVAGFLAAA-ERDQAigQAINLASNDEISIGELAEKIIALVGRQVt-------------------IDVDES 272 Roseiflexus sp....
WP_011721866 216 TRDFNYVKDTAEAFVKIA-ESEKT--------IGEVINAGSNYEISIGDTAKKIidl-----------ighDVKILCDEE 275 Clostridium novyi
WP_013718984 216 TRDYTFVKDTVNGF---I-RTAES--KS---SIGEVINIGSNFEISMGDLAQRIssllnkdi--mimqdssRVRP---LK 281 Methanosaeta co...
WP_041262873 215 TRDFNFVSDTVGGFIAAL-NSN--------AGTGEVVNIGSNFE---ISIGETVdmiaq--------lmgaKLKVVSDDV 274 Geobacter bemid...
XP_001837374 303 TRSFQYIHDLIDGMIALM-NSDET--RPVNIGNGDEFTILEFAE-----LVREIvekvqdedgvkrarrvnIVHRPLP-- 372 Coprinopsis cin...
WP_011524413 214 ARCFTHVSDSVNSIVQIA-A--HP------NANGEVYNIGTQEEITILDLARRIklltd--------sdskiVFVPYEKA 276 Candidatus Kori...
1RPN_C       289 FFRP--AEVDVLL--GNPAKAQRVLGWKPRTSLDELIRMM 324 Pseudomonas aeruginosa
Q3SPY1       273 RQRParSEVDRLF--ASNTKAQKLLSWTPQFAGLDGFRRG 310 Nitrobacter winogradskyi Nb-255
BAH39011     290 LVRP--VDVPALI--GDPRKLQRATGWRATRSLDDIIDDL 325 Gemmatimonas aurantiaca T-27
WP_013563842 274 RLRPatSEVGRLL--ADASLARRLFGWEPRVSLEEGLRRV 311 Isosphaera pallida
WP_011958761 273 RLRPetSEVFRLH--GDNRLAHELLGWKPLVSLDEGLRRT 310 Roseiflexus sp. RS-1
WP_011721866 276 RIRPekSEVNRLW--ADNTKIKNLTDWTPKYSIDEGLKET 313 Clostridium novyi
WP_013718984 282 ------SEVKRLW--CDNAKAKRLLGWEPQVSLDEGLKET 313 Methanosaeta concilii
WP_041262873 275 RIRPekSEVERLW--ADNAKAERLLGWSPAYAGKEGLRRG 312 Geobacter bemidjiensis
XP_001837374 373 KDDP-----QQRR--PDTTRAKESLQWQPRWTIRMGLEEM 405 Coprinopsis cinerea okayama7#130
WP_011524413 277 YEEG--F-EDMMRrvPDLTKAHKLIGYRPRVALDETLRSI 313 Candidatus Koribacter versatilis
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