Conserved Protein Domain Family
OCRE_RBM6

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cd16163: OCRE_RBM6 
OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
RBM6, also called lung cancer antigen NY-LU-12, or protein G16, or RNA-binding protein DEF-3, has been predicted to be a nuclear factor based on its nuclear localization signal. It shows high sequence similarity to RNA-binding protein 5 (RBM5 or LUCA15 or NY-REN-9). Both specifically binds poly(G) RNA. RBM6 contain two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), an OCtamer REpeat (OCRE) domain, two C2H2-type zinc fingers, a nuclear localization signal, and a G-patch/D111 domain. In contrast to RBM5, RBM6 has an additional unique domain, the POZ (poxvirus and zinc finger) domain, which may be involved in protein-protein interactions and inhibit binding of target sequences by zinc fingers.
Statistics
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PSSM-Id: 293882
Aligned: 12 rows
Threshold Bit Score: 65.4473
Created: 19-Jun-2015
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:OCRE repeat 1 [structural motif]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ########                                                                  
P78332        766 RGGGRNSDWSSDTNrqgqqsssDCYIYDSA-TGYYYDPLAGTYYDPNt--------------QQEVYVPQDPg------- 823  human
WP_046471896  312 PSEEPEPTPSTDPD--------TGWPIDPE-TGLAQDPQTGEYRDPAtgetv-----qidpqTGLPIDPYTG-------- 369  Nocardiopsace...
NP_001025759  804 GESQRRTRAQSPSDv-------STYIYDPE-TGNYYDPIAGTYYDPR---------------TQREVTIDREpcssp--- 857  chicken
XP_002935683 1255 AMSHTVADSRADSDg-------PSYIYDAE-SGLYIDPLTNTYYDPT---------------SPRVNPKAEGe------- 1304 western clawe...
XP_005703494  204 MGQSLYANYCMDPK--------SGWYYDPQtLYYVVDPVNLVFYDWS---------------RQNYLQYNSAtgtyiela 260  Galdieria sul...
XP_004994470  288 PPSNPLERLQMDPH--------SGYAYDPV-SGYYYDQSSGYFYDSS---------------TGVYYVFDTAt------- 336  Salpingoeca r...
XP_001743492  306 EPENPMERLRVDPA--------TGWLYDPH-TSYYYDKIHRLFYNGA---------------TRQYMQWDTTt------- 354  Monosiga brev...
WP_017883534  200 GGSAPAEEVQIDPE--------TGYQIDPT-TGQLIDPATGWLIDPD---------------TGWPVDPETG-------- 247  Leucobacter s...
CBL04341      906 YATLGDKPYVYDPN--------SGWMLDPD-NGAFHDANYGWLYDAA---------------TGHLVDEATG-------- 953  Gordonibacter...
ETO08543       41 SEYGIAPTFRWDCN--------SGHFYDPN-SGYYFDVVRKLYYFQAaiitstesrtqgfvlTKECVLYGMEkn------ 105  Reticulomyxa ...
XP_004996539   59 EQFERAMTFKFDAD--------SGYPIDPD-TGYYFVPEHNLFFDAS---------------SQCYLTYQDGs------- 107  Salpingoeca r...
WP_022759162  716 AATTTTPNVIVDPE--------TGAMYDPN-TGLQIDPNTGFYIDPA---------------TGLYIDPNTW-------- 763  Butyrivibrio ...
Feature 1                     
P78332        824 ----LPEEEEIK 831  human
WP_046471896  370 ----QPYDPTQQ 377  Nocardiopsaceae bacterium CA15-2
NP_001025759  858 penrRRRHESQE 869  chicken
XP_002935683 1305 ----TPRREEGQ 1312 western clawed frog
XP_005703494  261 stsaNPWNPSKG 272  Galdieria sulphuraria
XP_004994470  337 ---qAFVAAAAA 345  Salpingoeca rosetta
XP_001743492  355 ---kLFVAVETP 363  Monosiga brevicollis MX1
WP_017883534  248 ----APVDPATL 255  Leucobacter sp. UCD-THU
CBL04341      954 ----KHYDMSYA 961  Gordonibacter pamelaeae 7-10-1-b
ETO08543      106 ---vLPFFVVVG 114  Reticulomyxa filosa
XP_004996539  108 ----YHYHSTVA 115  Salpingoeca rosetta
WP_022759162  764 ----TYIDPATG 771  Butyrivibrio fibrisolvens

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