1K8I,4P4R,4P5T,3QIW,3C5J,1HDM,4I0P


Conserved Protein Domain Family
MHC_II_beta

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pfam00969: MHC_II_beta (this model, PSSM-Id:307218 is obsolete and has been replaced by 425967)
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Class II histocompatibility antigen, beta domain
Statistics
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PSSM-Id: 307218
Aligned: 27 rows
Threshold Bit Score: 96.2183
Created: 13-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1K8I_B     8 STCVLnDAGTPQDf-TYCVSFNKDLLACWDPDVGKIVPCEFGVlsrlaEIISNILNEQESLIHRLQNGLQDCATHTQPFW 86  house mouse
P13762    42 CECHF-LNGTERVwnLIRYIYNQEEYARYNSDLGEYQAVTELG-----RPDAEYWNSQKDLLERRRAEVDTYCRYNYGVV 115 human
Q3UUV9    42 aECHY-FNGKERVwsVTRFIYNQEEFARFNSDFGKFLAVTELG-----RPIVEYLNTQKDMLDNYRASVDR-CRNNYDLV 114 house mouse
Q1MTC8    29 QQCFYsTSDYSDMvyLASYSFNKVVDTQFNSSVGKFVGYTEQG-----LIFAENFNKDQAYLHQLKAQVDTFCRHNAQIW 103 zebrafish
1HDM_B     9 STCLLdDAGTPKDf-TYCISFNKDLLTCWDPEENKMAPCns-----laNVLSQHLNQKDTLMQRL-NGLQNCATHTQPFW 81  human
Q6MGA7    27 STCLLdDEGTPMDf-TYCISFNKDLLACWDPEEGQIVPCEYGVlfklaEFISNILNKEEGLIQRLKNGLQDCSTHTQPFW 105 Norway rat
P23068     8 VECHF-LNGTERVrfLVRHVYNRQQYVHFDSDVGLFVADTVLG-----EPSAKLFNSQPDVLEKNRAAVEMLCNYNYEIV 81  chicken
AAV80469   8 aECHY-LNGTERVryLVRYVYNRQEYAHFDSDVGKHVADTPLG-----EPQAEYWNSNAEILENRMNEVDTYCRHNYGVV 81  chicken
AAB65533   5 fECHY-PNGTERVryLVRFFYNREELARFDNEVGEFRAVSELG-----RPDAKYWNGQKDFMERKHAEVDTVCRHNYGVf 78  domestic cat
ACI41675   5 aECHF-TNGTERVryLERHYHNGEENLRFDSEVGEYRAVTELG-----RPDAKYWNGLKDYMEETRTAVDWFCRHNYGVF 78  tiger
1K8I_B    87 D 87  house mouse
P13762   116 E 116 human
Q3UUV9   115 d 115 house mouse
Q1MTC8   104 D 104 zebrafish
1HDM_B    82 G 82  human
Q6MGA7   106 N 106 Norway rat
P23068    82 A 82  chicken
AAV80469  82 E 82  chicken
AAB65533  79 d 79  domestic cat
ACI41675  79 d 79  tiger
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