1R5V,4P5T


Conserved Protein Domain Family
MHC_II_alpha

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pfam00993: MHC_II_alpha (this model, PSSM-Id:307229 is obsolete and has been replaced by 460019)
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Class II histocompatibility antigen, alpha domain
Statistics
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PSSM-Id: 307229
Aligned: 88 rows
Threshold Bit Score: 64.1082
Created: 14-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1R5V_A         2 EHTIIQ-AEfyllpDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAK-FASfeAQGALANIAV--------DKANLDVM 71  house mouse
Q31621        41 NHTFRH-TLfcqdgIPNIGLSETYDEDELFSFDFSQNTRVPRLPDFAEwAQG---QGDASAIAF--------DKSFCEML 108 house mouse
XP_004846911  41 NHTFRH-TVfcqegTPSIGLSESYDEDLLFSFDFSKNTRVPRLPDFAD-WAQ--DQSDAPAIAF--------DKQFCEIM 108 naked mole-rat
XP_007622902  42 NHTFRH-TVfcqdgNPSIGLSESYDEDQLF-YDFSQNTRVPRLPDFADwAQE---QGDASAISF--------DKEFCNML 108 Chinese hamster
XP_004770634  41 NHTFQH-TMycqnwNPSIGLSEAYDGDQLFSFDFSQNTRVPRLPEFADwAQK---PGDTSTIFF--------DKTFCQSM 108 domestic ferret
XP_003421115  41 NHTFLH-TMycqngTPSLGLSEAYDEDQLFSFDFSQNSRVPRLPEFADwAKD---QGDVSAISF--------DKEFCQSM 108 African savanna...
BAH12721      33 NHTFLH-TVycqdgSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADwAQE---QGDAPAILF--------DKEFCEWM 100 human
XP_013222059  41 NHTFRH-TVfcqdgSPSIGLTETYDEDLLFSFDFSRNTRVPRLPEFADwAQD---QRDASAIVF--------DKGFCEAM 108 thirteen-lined ...
EHB06470      92 NHTFRH-TVfcqegTPSIGLSESYDEDLLFSFDFSKNTRVPRLPDFADwAQD---QSDAPAIAF--------DKQFCEMM 159 naked mole-rat
XP_699949     17 KDYHKYgLIgacgdADQEDFIVQFDDEQLAHVDFKEQKDVITLPEFAG-------QAVLPPIYVdakraefnCKAYLAVL 89  zebrafish
1R5V_A        72 KERSNNTPDA 81  house mouse
Q31621       109 MREVSPKLEG 118 house mouse
XP_004846911 109 VQQLDPVLDG 118 naked mole-rat
XP_007622902 109 IQEIGPQLEG 118 Chinese hamster
XP_004770634 109 IQEIGPHLEG 118 domestic ferret
XP_003421115 109 IQDIGPQFDG 118 African savanna elephant
BAH12721     101 IQQIGPKLDG 110 human
XP_013222059 109 IEKIGPQLEG 118 thirteen-lined ground squirrel
EHB06470     160 VQQLDPVLDG 169 naked mole-rat
XP_699949     90 REVYASSPEV 99  zebrafish
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