Conserved Protein Domain Family
Syndecan

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pfam01034: Syndecan (this model, PSSM-Id:307260 is obsolete and has been replaced by 460035)
Syndecan domain
Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors.
Statistics
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PSSM-Id: 307260
Aligned: 21 rows
Threshold Bit Score: 63.8396
Created: 14-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8I4H9        222 TLAN--GFYAAIAGGVLVAVITAILLVLFVVFRIRKKDEGSYALDEP---K---QarpYAS--YgY-TKAST--KEF 285  Caenorhabditis e...
EKC21353      228 yIMGrpGLLAAVIGGAVVALLLTILLVMFIVYRMRKKDEGSYPLDEQ---K---Y---TNY--S-Y-MKAPD--KEF 289  Pacific oyster
KZS02920      308 SFFAqpGILAAVIGGAVVGLLCAILLVMFIVYRMRKKDEGSYVLDEP---KrnsP---NSN--P-Y--NKNS--REF 371  Daphnia magna
XP_009017057  246 SIFNspVILALIIGGVILSMLIFVLVVMFIVYRLRKKDEGSYALDENlkkK---S---KNI--E-Y-TKAPQahNEF 312  Helobdella robusta
CDS33341      426 EILNqpGVIAAIVGSTIAGLLLLILLILFCVYRLRKKDEGSYSLEEP---Q---KgatTSG--A-Y-VRAPS--REF 490  Hymenolepis micr...
XP_009167809  358 NLLRqpGVIAGIVGSAVAILLLLILFILFCIYRLRKKDEGSYALDES---K---Kl--PNM--N-Y-HRTPT--REF 420  Opisthorchis viv...
CCD76283      399 KILSqpGVIAGIVGSVVLVLLLLILLILFCIYRLRKKDEGSYALDEP---K---K---LPTvdT-Y-TRAPT--REF 462  Schistosoma mansoni
XP_001987281   54 SFFAqpGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDEP---K---Rs-pANN--S-YaKNANN--REF 118  Drosophila grims...
XP_002588429 1493 ALFShpGVMAAVIGGAVVGLLCAILLIMFIVYRMKKKDEGSYSLEDH---P---AkklNTN--A-Y-GKTSK--Efy 1557 Florida lancelet
KRY90023      216 dsflrpGILAAVIGGSVVGLLAAILLIMFIVYRMRKKDEGSYALDDS---K---TppsYPY--A-Y-HKAPT--REF 280  Trichinella pseu...
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