1UFN


Conserved Protein Domain Family
SAND
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pfam01342: SAND (this model, PSSM-Id:307487 is obsolete and has been replaced by 460167)
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SAND domain
The DNA binding activity of two proteins has been mapped to the SAND domain. The conserved KDWK motif is necessary for DNA binding, and it appears to be important for dimerisation. This region is also found in the putative transcription factor RegA from the multicellular green alga Volvox cateri. This region of RegA is known as the VARL domain.
Links
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Statistics
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PSSM-Id: 307487
Aligned: 70 rows
Threshold Bit Score: 65.6654
Created: 14-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1UFN_A        14 SPTLPVTCGKAKGTLFQEKLKQ-GASKKCIQNEAg-DWLTVKEFLNEGGRATSKDWKGVIRCNGETLRHLEQKGLL 87  house mouse
XP_003136102  19 APILEVRCGHLVARLHTEKFVCpGIHQPCIELDG--ELISPKEFTIRANKDKQKDWKGSIRIGKSNMRALMEMKSL 92  eye worm
XP_002643385  75 PPIITVKCGTLTAKMVTKLFTCpGIHQNCILIDGenEYISPKEFTVRANKDKQKDWKGSIRIGKSNLRTLMEMRSL 150 Caenorhabditis brig...
CBY12901      70 EEFFKVTCGIIEAKLIWKLFRCpGISQKCIRMSNg-EMITPKDLVKSAGKQTLKDWKRAIRINNTMLRKHMSEEgg 144 Oikopleura dioica
XP_002603143   1 eVAYPVMCGDNQGLLIWKKFICpGIHSRCIKYNG--MMRTPKEFVVEAGKAGLKDWKRAIRINGTMIRRMMETGEL 74  Florida lancelet
CAG00054       4 EYGYPITCGDSRAVLLFKKFVCpGINVRCVKFND--QLISPKQFVHLAGKATLKDWKRAIRLGGVMLRKMMDSGQI 77  spotted green puffe...
XP_017287380  69 eIGCPITCGDCKAVLLVKKFVCpGINVKCVKYED--QLISPKQFVHISGKATLKDWKRAIRMGGVMLRKMMDSGQL 142 mangrove rivulus
XP_014988585  92 EIAYPITCGESKAILLWKKFVCpGINVKCVKFND--QLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRKMMDSGQI 165 Rhesus monkey
XP_014926285  89 EIVYPITCGDSRANLIWRKFVCpGINVKCVQYDE--HVISPKEFVHLAGKSTLKDWKRAIRMNGIMLRKIMDSGEL 162 cheetah
XP_011620127  77 DVFYPITCGDAKATLIWKKFVCpGINVKCVQFNE--QLISPKEFVCLAGKSTLKDWKRAIRLNSTMLRKIMDSGEL 150 torafugu
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