4AE2


Conserved Protein Domain Family
COLFI

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pfam01410: COLFI (this model, PSSM-Id:307527 is obsolete and has been replaced by 460199)
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Fibrillar collagen C-terminal domain
Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1 alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.
Statistics
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PSSM-Id: 307527
Aligned: 22 rows
Threshold Bit Score: 329.278
Created: 14-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4AE2_A         23 EIMTSLKSVNGQIESLISPDG-SRKNPARNCRDLKFCHPE----LKSGEYWVDPNQGCKLDAIKVFCNMET-GETCISAN 96   human
P20908       1610 EIFGSLNSLKLEIEQMKRPLG-TQQNPARTCKDLQLCHPD----FPDGEYWVDPNQGCSRDSFKVYCNFTAgGSTCVFPD 1684 human
P12107       1578 EIFGSLNSLKQDIEHMKFPMG-TQTNPARTCKDLQLSHPD----FPDGEYWIDPNQGCSGDSFKVYCNFTSgGETCIYPD 1652 human
Q17A80        616 DMYSSIYSMRQELDRIRKPVG-TRENPGRTCRDLHYGHPQ----FKDGWYWIDPNLGMADDAVYVFCNMTAeGETCVFPD 690  yellow fever ...
NP_001029004  606 EMMVVLKELTNSVENIKAPRGvSKKTAARSCMDIYLAEQQqnivAKNGIRWIDPNGGCTADGIEVYCNFDT-METCVYPT 684  vase tunicate
XP_011679217 1569 VLFSSLDQLQTDVEGIKKPNG-TKDNPARTCKDLLMCHPK----TQDGYYWIDPNEGCPDDAFYAFCNMTAgGDTCLAPD 1643 purple sea ur...
NP_999674    1202 ELLGAISALGQQIELIKAPQGkAKTNPARSCKDVFLNNVE----AESGYYWVDPNLGCQKDAIQVYCEAET-GATCVPST 1276 purple sea ur...
XP_011490504   37 DVFGSLNNLKQDIERMKFPLG-TQDNPARTCNDLHLSQPD----FPDGEYWIDPNQGCIGDSIKVYCNFTAgGETCIYPD 111  Japanese medaka
NP_001073461 1466 EIFGSLNSLRQEIESMRFPLG-TKESPGRTCQDLHLSQPD----LKDGEYWIDPNQGCARDSFKVYCNFTAgGETCLYPS 1540 zebrafish
XP_016882338  736 EVLASLTSLSLELEQLRRPPG-TAERPGLVCHELHRNHPH----LPDGEYWIDPNQGCARDSFRVFCNFTAgGETCLYPD 810  human
4AE2_A         97 PLNVP-RKHWWTDSSaeK----------KHVWFGESMDGGFQFSYG----NPELPEDVlDVQLAFLRLLSSRASQQITYH 161  human
P20908       1685 KKSEGaRITSWPKEN-------------PGSWFSEFKRGKL-LSYV----DAEGNPVG-VVQMTFLRLLSASAHQNVTYH 1745 human
P12107       1653 KKSEGvRISSWPKEK-------------PGSWFSEFKRGKL-LSYL----DVEGNSIN-MVQMTFLKLLTASARQNFTYH 1713 human
Q17A80        691 LHSSQmPNIPWRKEN--D----------KTDWYSNLRGGFR-ISY---------ETVG-VVQMTFLRLLSEGAYQNFTYT 747  yellow fever ...
NP_001029004  685 NRHIE-NGTHYTGES-------------RHVYYGEEMATGSTVRYDpsdeDRVPHADY-TSQLTFLRLLSRQVKQHVTFY 749  vase tunicate
XP_011679217 1644 NTTGH-HFYNYTEEN--StetkgyrkavPGEWFLENLRGK-EFSY----------QGG-IVQLTFLRLLSSKATQKFTYS 1708 purple sea ur...
NP_999674    1277 NNVVS-NMTWYVGKT-------------KRAFFSSMHGGDK-FAYI----EDS-------TQMTFLRLLSTSARQTVTYF 1330 purple sea ur...
XP_011490504  112 RKSAGvRISNWPKET-------------PGAWFSEFKRGKI-LNYV----DAADNAID-LVQMTFLKLLSSSARQNFTYI 172  Japanese medaka
NP_001073461 1541 KAVENvKMNSWIKEK-------------PGSLFSQFAKGNK-FSYV----DSVGEAVG-VVQLGFLRLLSVQARQNLTYH 1601 zebrafish
XP_016882338  811 KKFEIvKLASWSKEK-------------PGGWYSTFRRGKK-FSYV----DADGSPVN-VVQLNFLKLLSATARQNFTYS 871  human
4AE2_A        162 CKNSIAYMDQAS-GNVKKALKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWSKTVFEYRTRKAVRLPIVDIAPYDIG 240  human
P20908       1746 CYQSVAWQDAAT-GSYDKALRFLGSNDEEMSYD--NNPYIRALVDGCATKKGY-QKTVLEIDTPKVEQVPIVDIMFNDFG 1821 human
P12107       1714 CHQSAAWYDVSS-GSYDKALRFLGSNDEEMSYD--NNPFIKTLYDGCASRKGY-EKTVIEINTPKIDQVPIVDVMINDFG 1789 human
Q17A80        748 CMNSVAWYSNLE-ENHDDAIRFLGDNEIDIGYEN-SKLRPNVLVDGCKSGKSK-SETIFEIRTTKLQYLPIIDFYPVDYG 824  yellow fever ...
NP_001029004  750 CRNMVAYYDAAA-DNKAQALKLRGFGDAEFTAEGDPSTTYRVLHDGCTGRPSTWGKTDIEFTTGFVGRMPITDIAPFDIG 828  vase tunicate
XP_011679217 1709 CVNGVAWYDEAE-DSFDNAIRLLASNDEEFTFDGLN--QPKVIKDECKNKPSL-GETILEVNTSKLHQLPISDFAPLDFG 1784 purple sea ur...
NP_999674    1331 CKN------------VQGNPIFLSSSDVELVDDQDSKFNYRTLEDGCSSSSSQWGKSVYEYETKKTTRLPIVDFAPGEVG 1398 purple sea ur...
XP_011490504  173 CHQSVAWYNALT-DSYDKALRFLGSNDEEMSYD--NNPFIKPLMDGCSLRQGY-SRTMLEINTPRIDQLPIIDVMLNDFG 248  Japanese medaka
NP_001073461 1602 CQRSVAWTDQTTdGGYKRALRLQGANDEEISYE--TSPYIKALIDGCSYRKGL-DRTVLEVNTPQVEQLPLLDIRISDFG 1678 zebrafish
XP_016882338  872 CQNAAAWLDEAT-GDYSHSARFLGTNGEELSFNQTTAATVSVPQDGCRLRKGQ-TKTLFEFSSSRAGFLPLWDVAATDFG 949  human
4AE2_A        241 GPDQEFGVDVGPVCF 255  human
P20908       1822 EASQKFGFEVGPACF 1836 human
P12107       1790 DQNQKFGFEVGPVCF 1804 human
Q17A80        825 QPQQAFGFQVGPVCF 839  yellow fever mosquito
NP_001029004  829 GADQQFGAEFGPACF 843  vase tunicate
XP_011679217 1785 RRNQKFGYTVGSACF 1799 purple sea urchin
NP_999674    1399 SESQMFGLEMGPVCF 1413 purple sea urchin
XP_011490504  249 ESNQRFGFEVGPVCF 263  Japanese medaka
NP_001073461 1679 EDNQKFGFEVGPVCF 1693 zebrafish
XP_016882338  950 QTNQKFGFELGPVCF 964  human
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