4C2G,4BJ4,3BKH,4XXT,4FET


Conserved Protein Domain Family
PG_binding_1

?
pfam01471: PG_binding_1 (this model, PSSM-Id:307564 is obsolete and has been replaced by 426277)
Click on image for an interactive view with Cn3D
Putative peptidoglycan binding domain
This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.
Statistics
?
PSSM-Id: 307564
Aligned: 207 rows
Threshold Bit Score: 33.6341
Created: 14-Jul-2016
Updated: 4-Aug-2016
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
4C2G_A 355 NNEDVKHAQVLLKGLsfD-------PG----RED---GYFSKDMKKAVMAFQDQNKLNKTGVIDTRTAETL 411 Bacillus subtilis subsp. subti...
P45756 407 SEEEILWLETMLNRAlhI-------ST----EPS---AEWRPLLVEKIKQFQKSHHLKTDGVVGFSTLVHL 463 Escherichia coli K-12
Q5LBJ8   9 eGEEALLLCRELKRNgyS--------V----KES---RTFTQEMKEAVIDFQQKNKLDADGIVGYRTWEVL 64  Bacteroides fragilis NCTC 9343
Q9CCX8  17 RNAAVTEIRSALAALglLhspgddlTTsk-yIAL---DLFDPQLEHAVRAFQQHRGLLVDGVVGEATHRAL 83  Mycobacterium leprae
Q6APC7 238 REKRIISIRKRLQFAgpF-------LEaprdSDL---SQYDLILEEAVLSFQQLHGLQTDGIIGRNTVDAL 298 Desulfotalea psychrophila
Q5LS41 213 GGPRVVALRNRLIAMgfM-------DR----SAV---ASYDGTLQKAVQAFQLAHGLEADGVAGDGTLDEI 269 Ruegeria pomeroyi
Q60A67 224 RHGEVPALRKRLAALgfLwq---esSS----KEP---EVYAGDLVEAVARFQERHGLAPDGVIGKGTLAAL 284 Methylococcus capsulatus
Q5NLM2 165 DNPRVKTLRRRIAIEdkEl------PD----NGS---SHFDAALKAAVKRAQQRYGLNPTGVVSGQTLQAL 222 Zymomonas mobilis
Q9A853 203 TGARVVALEARLAAEdpT--------V----AVDa-aPVFDAALTQAVQRAQKRFGLNPNGIVDRATLAAL 260 Caulobacter vibrioides
Q89RI8 117 QGANDDLLRKRLIVSg---------dL----SADkasGAFDQDLADAVKRFQARHGLAPTGMVTPRTLAAM 174 Bradyrhizobium japonicum
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap