4C2G,4BJ4,3BKH,4XXT,4FET


Conserved Protein Domain Family
PG_binding_1

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pfam01471: PG_binding_1 (this model, PSSM-Id:307564 is obsolete and has been replaced by 396175)
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Putative peptidoglycan binding domain
This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.
Statistics
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PSSM-Id: 307564
View PSSM: pfam01471
Aligned: 207 rows
Threshold Bit Score: 33.6341
Threshold Setting Gi: 152031638
Created: 14-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4C2G_A 355 NNEDVKHAQVLLKGLsfD-------PG----RED---GYFSKDMKKAVMAFQDQNKLNKTGVIDTRTAETL 411 Bacillus subtilis subsp. subti...
P45756 407 SEEEILWLETMLNRAlhI-------ST----EPS---AEWRPLLVEKIKQFQKSHHLKTDGVVGFSTLVHL 463 Escherichia coli K-12
Q5LBJ8   9 eGEEALLLCRELKRNgyS--------V----KES---RTFTQEMKEAVIDFQQKNKLDADGIVGYRTWEVL 64  Bacteroides fragilis NCTC 9343
Q9CCX8  17 RNAAVTEIRSALAALglLhspgddlTTsk-yIAL---DLFDPQLEHAVRAFQQHRGLLVDGVVGEATHRAL 83  Mycobacterium leprae
Q6APC7 238 REKRIISIRKRLQFAgpF-------LEaprdSDL---SQYDLILEEAVLSFQQLHGLQTDGIIGRNTVDAL 298 Desulfotalea psychrophila
Q5LS41 213 GGPRVVALRNRLIAMgfM-------DR----SAV---ASYDGTLQKAVQAFQLAHGLEADGVAGDGTLDEI 269 Ruegeria pomeroyi
Q60A67 224 RHGEVPALRKRLAALgfLwq---esSS----KEP---EVYAGDLVEAVARFQERHGLAPDGVIGKGTLAAL 284 Methylococcus capsulatus
Q5NLM2 165 DNPRVKTLRRRIAIEdkEl------PD----NGS---SHFDAALKAAVKRAQQRYGLNPTGVVSGQTLQAL 222 Zymomonas mobilis
Q9A853 203 TGARVVALEARLAAEdpT--------V----AVDa-aPVFDAALTQAVQRAQKRFGLNPNGIVDRATLAAL 260 Caulobacter vibrioides
Q89RI8 117 QGANDDLLRKRLIVSg---------dL----SADkasGAFDQDLADAVKRFQARHGLAPTGMVTPRTLAAM 174 Bradyrhizobium japonicum
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