4WFC


Conserved Protein Domain Family
Sas10_Utp3
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pfam04000: Sas10_Utp3 (this model, PSSM-Id:309214 is obsolete and has been replaced by 461123)
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Sas10/Utp3/C1D family
This family contains Utp3 and LCP5 which are components of the U3 ribonucleoprotein complex. It also includes the human C1D protein and Saccharomyces cerevisiae YHR081W (rrp47), an exosome-associated protein required for the 3' processing of stable RNAs, and Sas10 which has been identified as a regulator of chromatin silencing. This family also includes the human protein Neuroguidin an initiation factor 4E (eIF4E) binding protein.
Links
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Statistics
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PSSM-Id: 309214
Aligned: 350 rows
Threshold Bit Score: 29.1004
Created: 25-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
4WFC_B        11 VRSFSKALDELKPEIEKLTS----------KsldeqllllsDERAKLELInrYAYVLSSLMFanMKVLGvk------dMS 74  baker's yeast
A0DDV4       145 wpELKGILKEITQVGKEIKIlkrnckkekgSei------kkYLTIRIELM--QSYFGLLWFYlhLRARTrl------sQH 210 Paramecium tetr...
XP_015782616 140 VEDFKKSLAEMEKHKKVLNYsnvdnieaykLslp-----frLFKTKFNLL--NCYCMNISFYllLKSKGks------tVN 206 two-spotted spi...
XP_009530836 239 mSELEATTKELEEVVTPAVMklrpvrrks----rqlqmglrYLMTRQNLL--LNYSANISFYllLRAEGks------vSD 306 Phytophthora sojae
CBN76772     297 LGEVRAQLGTLTESVQPLVSnvtaeigaskDgl-------vYLRTRQQLL--LAYCMNVCFYmvLKAKGep------aKG 361 Ectocarpus sili...
KFP99252      13 IEDFEVKLMELKDELHPLLQmvkngtipqgKgs-------rYLQTKYHLY--LNYCANISFYlvLKSKRip------vHS 77  Leptosomus disc...
XP_001634067  13 LNEMKTKLREIVDCLNPLLDlvkqghi--------pdegakYIELKHKLY--LTYCINIAFYlrLKAQQas------vKD 76  starlet sea ane...
XP_002599632  15 MDDFKEKLQEVIDRLHPLLKmvrsgiippgKga-------tYVETKFQLY--LNYCVNISFYlvLKAGHtp-----nvRS 80  Florida lancelet
XP_002120979 211 IKDFKLKITELNDRINPLLDlvtagki--------tgngaiYVNTRFKLY--TAYLINVAFYlsLKAKLsp------vGN 274 vase tunicate
XP_002113468 407 IEDYKEKMEEIGRTLHPLIQfakckgllssQgi-------sYLETKYQLL--LNYCVNVSLYlaMAAHEsnsefdvslHE 477 Trichoplax adha...

4WFC_B        75 -PILGELKRVKSYMD 88  baker's yeast
A0DDV4       211 hPIFKKINDLKELIE 225 Paramecium tetraurelia
XP_015782616 207 hPCASNLVKLKKTil 221 two-spotted spider mite
XP_009530836 307 hPVLMHLLLLKKQLN 321 Phytophthora sojae
CBN76772     362 hPVVRRLLSLRGLLE 376 Ectocarpus siliculosus
KFP99252      78 hPVIERLVAYRNIIn 92  Leptosomus discolor
XP_001634067  77 hPVIARIVQLRTLMK 91  starlet sea anemone
XP_002599632  81 hPVINRLVQYRNLIN 95  Florida lancelet
XP_002120979 275 hPVVKRLVEYRTLIN 289 vase tunicate
XP_002113468 478 hPIISTLLEYRHLia 492 Trichoplax adhaerens
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