4C2M


Conserved Protein Domain Family
RNA_pol_I_A49

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pfam06870: RNA_pol_I_A49 (this model, PSSM-Id:311058 is obsolete and has been replaced by 462024)
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A49-like RNA polymerase I associated factor
Saccharomyces cerevisiae A49 is a specific subunit associated with RNA polymerase I (Pol I) in eukaryotes. Pol I maintains transcription activities in A49 deletion mutants. However, such mutants are deficient in transcription activity at low temperatures. Deletion analysis of the fusion yeast homolog indicate that only the C-terminal two thirds are required for function. Transcript analysis has demonstrated that A49 is maximising transcription of ribosomal DNA.
Statistics
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PSSM-Id: 311058
Aligned: 105 rows
Threshold Bit Score: 192.055
Created: 21-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4C2M_2        33 PSDTTFDLYK------KKksEKDEFVLHGEN-ERLEYEGYTDSSSQAs----nQYVVGLFNPEKKSIQLYK-APVLVSKV 100 baker's yeast
Q95X83        43 LKNLTFERHGkg---gRK--KAPIFSVKGDIsEHVVEVGADVNCLDEg----fDFAVALVDKRTGEATYRP-ARFYSFES 112 Caenorhabditis ...
XP_007498064  32 SENVNFSLYKskdttnPR--KKFRRILAAET-DRLSYVGNNFGTGALkcnnlcRYFVGVLNKNSGQMEIYD-AELFNMQP 107 gray short-tail...
XP_005061362  87 PDSLRFTVYRsqdtahPR--KKHRRILVSET-ERLCYVGHNFGSEVMkcnslcRYFVGVLDKNSGQMEVYN-AEIFNMQP 162 collared flycat...
XP_424416     31 PDAVRFSLYRssevanPR--KRRRRILVSET-ERLSYVGNNFGSGAMkcnslcRYFLGVLNKDTGQMEVYN-AEIFNMQP 106 chicken
OCA49786      32 PESVNFTLYSnkddnnPK--AKRQRILAAET-DRLSYVANNFTSDAVksnslcRYFVGVLNKETGKMEVYD-SEQYRMQP 107 western clawed ...
XP_001625428  37 kdgLKFSYYRwadkadRR--KKQRRTLVAKS-EKMEYNGQNFGQFSRass-lcKYLVGVHDTSTGDMNVYD-AQMFTLQP 111 starlet sea ane...
XP_003089894  43 LSELTFERHGka---gRK--KAPILSVKGGIsEKVVEMGQDVNCLDEg----fDFAVAIVDTTTGLATYRP-ARLYSFES 112 Caenorhabditis ...
ETI46701      35 RKDLAFEVFE------NP--AKKQRLVIASS-EKVAYQGANFGYLGSshd-faNYAVGVYDRKTKEVRLCNvNQIYVMQQ 104 Phytophthora pa...
CBJ28345      73 msAVEFRMHEad---dEE--REGQKIVMGDG-GRMDYWGLNFGPGAEsnd-lcRFLVGVEDGATGELILHEaGHAYSLRQ 145 Ectocarpus sili...
4C2M_2       101 VS--------KSSKN--LRGPKI-------KSkSDTRpsaLRNALGEAFGTKKAKKAIADLERNRIDs------DKLTDS 157 baker's yeast
Q95X83       113 KFsedi-ekifSDKK--ESSSEEykndfsiGAeKWAE---KRRQLTSNFGSSKKIKMDEAAQRRTINq------ETLDEM 180 Caenorhabditis ...
XP_007498064 108 VF--------SDDLK--DSETTLg-----nQTkSYRD---QVDFCIEAFGTTKQKRALSSRRMNKVGs------ETLNIA 163 gray short-tail...
XP_005061362 163 LL--------SDNPL--PDDTKd------yQTkSYRE---KMDLCIEAFGTSKQKRALSSRRMNAVGt------DIVSTA 217 collared flycat...
XP_424416    107 LL--------SDNVI--PDDTRd------yQNkSYRE---KVDLCIEAFGTSKQKRALNSRRMNAVGn------DIVSTA 161 chicken
OCA49786     108 IL--------ESNKEkeLHTEDVmd----qPSkSYRE---KVDALIESFGTNKQKRALSSRKLNQVGs------EILNKA 166 western clawed ...
XP_001625428 112 KI--------LETAA--ATEQEDs-----kKDmSYLE---KNDRLTEAFGSNKKKRAMVSRQKNMIEe------DVLDTT 167 starlet sea ane...
XP_003089894 113 KYsedvekllNADKK--SLSGDNfsedfsiSAeKWAE---KRRQLTSNFGSSKKIKMDEAAQRRTINq------ETLDEM 181 Caenorhabditis ...
ETI46701     105 AI--------KNASE--NVDDNRg------EDkNFMD---QRRDLVEVFGSKKSKRMQKNREENIVDle---niSGAASV 162 Phytophthora pa...
CBJ28345     146 SV--------GDKDD--NIEDFAm------EGlEYKQ---RKDALVNQFGSKKKKAAIRSRDANVIQagsvvggSAMSRV 206 Ectocarpus sili...
4C2M_2       158 AIDIVDSVRTASKDlpt-------raQLDEITS--ND---RPTPLANIDATDVEQIYPIESIIPKKELQFIRVSSILKEA 225 baker's yeast
Q95X83       181 RKTAFASNSNVKTEdgaadvklenitMMNKAES-------SILPPA-VQTELSRDIYPISLFLEDIEIDAIESIATELME 252 Caenorhabditis ...
XP_007498064 164 VAKAAENIIDEKGVtalln--daaqnDLQDES--------AYLPPCHTDGVKPEEIYKFEDLISPEEYKALQDPSEVLKN 233 gray short-tail...
XP_005061362 218 VTKAAANVIDAKGVtalvq--dvaqdDVQNIS--------AFLPPCHEDADSPEHVYKFEDILSPAEYEALRVPAAALAS 287 collared flycat...
XP_424416    162 VTKAAADVIDAKGVtaliq--dvaqdDEQNMS--------IFLPPCHEDADKPENVYKFEDILSPAEYEALQGPAAAFMN 231 chicken
OCA49786     167 MAKAAEEIIESRGTkelvk--davdkKQQETS--------LFLPPCDYNANKPENAYKFDDLISPVEYAALETASAAFRN 236 western clawed ...
XP_001625428 168 VVNAVKGSLNASFTemee------------------peqsSSIPPYNQNALEPSDVYRLDNIITPPEYETIRGPAKELEA 229 starlet sea ane...
XP_003089894 182 RKTAFASNSNVEDSedvkl---editMMAKATS-------SILPKA-VQSELAKDIYPISLFIEDVEVEAVEQIAVELME 250 Caenorhabditis ...
ETI46701     163 SQTLQKKISAAKRKleeeraqdgsysKEGAALAatRN---ALLPPCDVDAPTPDRVYDLTKFMDHAVMDSLTIMAEEVIQ 239 Phytophthora pa...
CBJ28345     207 LGRALKEEEGGGaggvd-----gdptATDGALAavEEarrRFLPKMRTEASTPEGVYSAGDIAGVQELESMEREIDRAAE 281 Ectocarpus sili...
4C2M_2       226 -DKEKKLelf-------pyqNNSKYVAKKLDSLTQPSQ-----MTKLQLLYYLSLLLGVYENRR-VNN-KTKLLERLNSP 290 baker's yeast
Q95X83       253 kKKKEKLe---------------aGIPECVTLIMYNEKtkqraAAYLLLSTMIEILTKMGKQRQlLRKdl-----seLKM 312 Caenorhabditis ...
XP_007498064 234 vTSEEILkmi-------eekSYCPFVIEALKSLPL--Nee-srDHKARCLWFLNILIKFRSQSViKKKns-----lgPEV 298 gray short-tail...
XP_005061362 288 iTTEELAkka-------eerSHCSFVLEELKFLPT--Dek-srDHKARCLWFLDTLIKFSRLKViKKKhp-----mgPEC 352 collared flycat...
XP_424416    232 iTPEEIAkkt-------eekSHCSFVLEELKFLPA--Dek-srDRKARCLWFLDILIKFSFLKIiKKKhp-----mgPEC 296 chicken
OCA49786     237 mTSEDLLqmv-------enkKSGLFVLQELQGLREIKDek-alDHQARCLWYLDALIKLSQLRTvKRKdi-----mtPEC 303 western clawed ...
XP_001625428 230 -SKRDTIdewr------qqsRFPEYILHHAAVMPMDPEq---rAHKSCLLLYLSYMITLYHLNYkAINkkd----vlSNV 295 starlet sea ane...
XP_003089894 251 lKKKSKKali------------eaGIPDCVTLIMYNETvpkraAAYLLLATMCEMLGKMGKQRQmLRKem-----aeLKM 313 Caenorhabditis ...
ETI46701     240 aLQTTSVaeya------aslNLASLPTRLMLSLPAPYD-----VNKMCLVVYLAYMIDFYNSRFpLRKsaav-fseeKGI 307 Phytophthora pa...
CBJ28345     282 -QIEGGMhqwakdfaerpreSCPHFVGKRLTLLLDLGErn--qKRRMLELLYLRHMCVFHHASAlLKGtPAQLSAKL-DI 357 Ectocarpus sili...
4C2M_2       291 PEILVDGILSRFTVIKPgqfgrs--kdrsyfIDPQNEDKILCYILAIIMHLDNFI-VEITPLAHELNLKPSKVVSLFRVL 367 baker's yeast
Q95X83       313 PDILRQKVQAQFFNDSTnekgytgrgaerirLNVTDYDRFIAHTLALALTLAPEHkVPITPFQQALSYQPSKLEKMFQAL 392 Caenorhabditis ...
XP_007498064 299 PHIINTKLLKNFTSLTYnngs------lrnlISDSMKAKITAYVIALALHIDDFQ-TDLTMLQRDMKLSEKRIIEIAKAM 371 gray short-tail...
XP_005061362 353 PHIISRKLMKNFSSLTYndgs------iqnlISASMKAKITAYVIALALHINNFQ-TDLTVLQNDMKLSETRILDIAKAL 425 collared flycat...
XP_424416    297 PHIISRKLMKNFTSLTYnngs------vqnlISASLKTKIAAYVIALALHIKNFQ-TDLTVLQNDLKLHESRMMDIARAM 369 chicken
OCA49786     304 PGIICGKLMKNFTVEVFkngr------iqnsISGTTKTKIVAYVIAIALHISDFQ-VDLTLLQRDMKLQESRILEIAKAM 376 western clawed ...
XP_001625428 296 PDMIKNKLLRMFTLENPqrrg-------nrlVPKRLKDRLLSYILVLALIIDDFI-VDCNSIGKSLKMDPKKVANHMRVL 367 starlet sea ane...
XP_003089894 314 PDVLRQKVQSQFFGESTaekgytgrgaerirLNVTDYDRFVAHTLALALTLAPEHkVPLTPFQQVVGMQPSKLEKMFQAL 393 Caenorhabditis ...
ETI46701     308 PLVIVRHFLKLFTDISEgngy------ptyfQSKAMKDKLSLHLIVVALTVNGFT-LDLTEVGNDLKKSSIHIQAYARQL 380 Phytophthora pa...
CBJ28345     358 PEIVLRRLLEKFSVCEKkgagg----tanyvRTKTLKNQLVVHALCLALVLEGCR-LEIGVLAEDFRLSTAEARSMLREL 432 Ectocarpus sili...
4C2M_2       368 GAIVKGATVAQAEAFGIPKSTAaSYKI---ATMKVPF--KLPEMTRRGR 411 baker's yeast
Q95X83       393 GADLIRLDVASAQTL----------RSlraAILLKP-----PSLEQKGP 426 Caenorhabditis elegans
XP_007498064 372 RLKISKKKLSLESGGEE------HHKI---GTLSIPL--PALPLRKrr- 408 gray short-tailed opossum
XP_005061362 426 RLRVSKAKGGPGLEDEH------NHKL---GTLSLPL--PSQKAPEGQR 463 collared flycatcher
XP_424416    370 RLKVSKAKGMPGLENDQ------NHKL---GTLSLPL--PVQKASGSQR 407 chicken
OCA49786     377 GLKIAKRTMYSESLIEE------GHKI---GMLTIPL--TVYKPSGGEl 414 western clawed frog
XP_001625428 368 GCSVDSAGTGRKRKVDGETAAA-DTRT---ASLVTPLppNFPni----- 407 starlet sea anemone
XP_003089894 394 GADLLRLDVHTAQTL----------RSlraAVLLKP-----PSLEQKGP 427 Caenorhabditis remanei
ETI46701     381 GCIVEKAKADTAVYGGAASLA--SKKQiqrAVLSVPL--HFPLPKRGGP 425 Phytophthora parasitica P1569
CBJ28345     433 GCTATNTS----------------------AHLKLPL--TFPRSRKARa 457 Ectocarpus siliculosus
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