3AYH,5FJA


Conserved Protein Domain Family
RNA_pol_Rbc25
?
pfam08292: RNA_pol_Rbc25 (this model, PSSM-Id:311961 is obsolete and has been replaced by 400543)
Click on image for an interactive view with Cn3D
RNA polymerase III subunit Rpc25
Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III.
Links
?
Statistics
?
PSSM-Id: 311961
Aligned: 23 rows
Threshold Bit Score: 118.927
Created: 22-Jul-2016
Updated: 4-Aug-2016
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
3AYH_B        79 PFRGEVMLGKIKSCSEEGIRVTISFFDD-IFIPKDMLFDPCVFRPDERAWVWKIEged-----------gsEG------- 139 Schizosaccharom...
Q4CPV8       116 PTPGARLRATISAQTREGIFLTLEFFQFvFFVPGDLLVAPSSYHEEKKCWVLHVEeeeeddveegeekgalES------- 188 Trypanosoma cruzi
Q7PZW7        79 PMIGDVITGKIRSCSREGVHITLGFFDD-ILIPPSALQHPSRYEEAEQAWVWEYPle------------dgNT------- 138 Anopheles gambi...
Q9VTL6        79 PMVGTVITGKIRNCSREGVHVTLGFFDD-ILIPHAALQHPSRFDEAEQAWVWEYPle------------dgAK------- 138 fruit fly
Q23645        79 PFVDEVIEAKVIGSSRQGLCLTIQFFED-IFVPAEKLPEPHVFEEEGQVWYWEYAqed-----------gePP------- 139 Caenorhabditis ...
Q382L2       103 PTPGARVRATIGAQTREGIFLSLDFFQFvFFVPGDQLIAPSFFDEGNQCWMLRVDdg------------tdED------- 163 Trypanosoma brucei
Q557J3        78 PFKGEVLEGVIKKSSRQSIQISLGFFHE-IYLNPIELPNPSNYNQEEGLWYWEW-----------------NE------- 132 Dictyostelium d...
XP_001418348  81 PFAGEVIEGTLLSADAHGAHVSIGFFKD-IFVPPTNMQAPSEYDDDSKVWMWDYD-----------------G------- 135 Ostreococcus lu...
AAW45819      79 PFVGEVIVGRVLSTTKTYIRVSLGFFQD-IYIVPSLLPPNSAYDPQQKAFFWVAI----------------DDestltqe 141 Cryptococcus ne...
XP_011389326  79 PFTQEVLTGKIKSSDEAGIRVSMGFFDD-IYIPYHLIPKPCAFDHQERAWFWLYEarteqia--adpllsqPE------- 148 Ustilago maydis...

3AYH_B       140 --------TELYFDIDEEIRFQIESEDFv-dISPKRNKNA-----------------------TAITGTEALESVSPYTL 187 Schizosaccharom...
Q4CPV8       189 --------ALNPYENGDEVIVKVEHVIV---RELVDFHSNvgtnsqnin------niiinsgvSADGKEGSPTSQSPMEV 251 Trypanosoma cruzi
Q7PZW7       139 --------HDLYMDIGENIKFRVSGEVFe-eSSPIGPPDQevpsss-----------tgastsGGAGSSGQESNKTPYRI 198 Anopheles gambi...
Q9VTL6       139 --------HDLFMDVGEPIKFRVSREIFe-eTSPIGPPKTeaqtqq------------gastsAAVASATSQEVKTPYRI 197 fruit fly
Q23645       140 --------AKLYMDPGKIVRFRVTEIIFk-dLKP-------------------------------ELTHEERKTEKSMEI 179 Caenorhabditis ...
Q382L2       164 --------AVNPYEKGDEVVVRVDRVIV---RDPVDLHRAegargstsnamgnadgtrsatggLKDSGREPQVEKWPMEV 232 Trypanosoma brucei
Q557J3       133 --------NQLFFEDGGRVRFKIDQVEFnpeISQPAPSPKnvnteamds-----yslreykekQIENENLLKQVKSPLIL 199 Dictyostelium d...
XP_001418348 136 --------ELMEMKVGERFRFKVVAVRFp-eSPKTAEELAslt-----------------resGAAPRDGGDAAFAPMLV 189 Ostreococcus lu...
AAW45819     142 qllntvisERLYIDLGEAIRFRVDSIEWq-dVRPTPQAMlae-------------------mnGEAVEGKDPIEKAGFKI 201 Cryptococcus ne...
XP_011389326 149 --------ERMYLDTAEAVRFTVESDAFw-dSEPGPGAATrsads-------------atqnaLHQKEHTTKETKPHYSI 206 Ustilago maydis...

3AYH_B       188 IASCSRDGLGIPAWW 202 Schizosaccharomyces pombe 972h-
Q4CPV8       252 RGSFVGTGLGPVLWF 266 Trypanosoma cruzi
Q7PZW7       199 VAAINESGLGLLSWW 213 Anopheles gambiae str. PEST
Q9VTL6       198 IGAINESGLGVLSWW 212 fruit fly
Q23645       180 KGTMASTGLGCIGWW 194 Caenorhabditis elegans
Q382L2       233 YGSFVGTGLGPVVWF 247 Trypanosoma brucei
Q557J3       200 KVSMREAGLGMVSWW 214 Dictyostelium discoideum
XP_001418348 190 IADINEDGLGLCSWW 204 Ostreococcus lucimarinus CCE9901
AAW45819     202 LATIAESGLGVTAWW 216 Cryptococcus neoformans var. neoformans JEC21
XP_011389326 207 TASIAGSGLGLVSWW 221 Ustilago maydis 521
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap