2DO7,1U6G,1LDJ,1IUY,3O6B,3O2P,3DPL


Conserved Protein Domain Family
Cullin_Nedd8

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pfam10557: Cullin_Nedd8 (this model, PSSM-Id:313722 is obsolete and has been replaced by 463146)
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Cullin protein neddylation domain
This is the neddylation site of cullin proteins which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognizes and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae, and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue.
Statistics
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PSSM-Id: 313722
Aligned: 412 rows
Threshold Bit Score: 37.0512
Created: 26-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DO7_A           29 QYQIDAAIVRIMKMRKTLSHNLLVSEV--YNQLk--FPVKPADLKKRIESLIDRDYMERDKEN 87   human
A0BLH1          698 DLAIEAAIVKIMKKQKEMQFSDLVIQVqgHMKKnqnVEIPFAQIKQMIERLQRNEYLERDANN 760  Paramecium tetraurelia
Q4QEP5         2134 RVLLDAALVRIFKSRRVVLFEDLFQTV--TAHLsrqFMPSRRDVKAQLEGLIDRDYVKRSPDN 2194 Leishmania major
Q57UJ3         1093 RLQVDAAIVRTMKRHRSLPYHELMSTT--VQELsrfFVPSTQFVKVQVEGLIAREFLKRNEAN 1153 Trypanosoma brucei
165_pfamImport    3 RQQIAAAIVSVMKKQRVLHFSELLELT--RQQLssrFQPSAQLIKVLVEDLVAREFLRRSDAN 63  
Q4DVD1         1162 RIQMDAAIVRIMKSRRSLRYYELFDLT--VQQLskqFVPHPRSVKMQVEDLVCRGFLRRSEKD 1222 Trypanosoma cruzi
49_pfamImport     3 TMAIEAAIVRVMKAHKKLFYDQIFDYV--KKSLs-sFSPTNQIIEKKIDLLVEREYLQKEENS 62  
22_pfamImport     3 VLSIEGAVMRVLKELGPLSLDDTIGKV--SASLg-kLSVQRRDIKKVLEKLVEREYVERSEDN 62  
Q5CQV3          759 SHAIEAAIVKIMKIKGQMTRSDIIAHV--SSQLc-eYKPSEIMIIDKIKYLIEREYLENDQDD 818  Cryptosporidium parvum
Q4D018          421 APAVQATLVRVFKASGTLSFYELMEKV--KDESpqkFMPSVQQVKVALEFLISRGFVIRDNSn 481  Trypanosoma cruzi
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