2XKX


Conserved Protein Domain Family
PDZ_assoc

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pfam10600: PDZ_assoc (this model, PSSM-Id:313755 is obsolete and has been replaced by 463164)
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PDZ-associated domain of NMDA receptors
This domain is found in higher eukaryotes between the second and third PDZ domains, pfam00595, of glutamate receptor like proteins. Its exact function is not known.
Statistics
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PSSM-Id: 313755
Aligned: 23 rows
Threshold Bit Score: 96.6995
Created: 27-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2XKX_A       242 KPSNAYLS--DSYAPPDITTS------YSQHLDNEISHSS----YLGTDYpt----amTPtSPRRYSPVAKDLLGEEDIP 305  Norway rat
XP_014813767 413 KPTTIYMT--DPYGPPDITHS------YSPPMENHILSSG----NNGTLEyka---slAPiSPGRYSPIPKHMLVEDDYT 477  Philomachus pu...
XP_011481840 275 KPTQVYLS--DSYGLSNVKRS------FSPTMESLTSSPI----IFRTPDfrs---dlCSaSPTSHSHLNMRLQDEDEIS 339  Japanese medaka
XP_004545693 332 KPGPVHLN--DMYAPPDYSST------FPTMVDNHVSHN-----YMGGMEpkpv-yppPQvTPSRYSPVPRHMMGEEDFT 397  zebra mbuna
XP_010784425 341 KPGPVHLN--DMYAPPDYSSSmalppaFPTMVDNHVGHN-----YMGAMEpkpv-yppPQvTPSRYSPVPRHMLGEEDFT 412  black rockcod
XP_007254471 330 KPGPVHLN--DMYAPPDYSST------FPTMVDNHVSHNSsm-aYMGGMEpkpv-yqpPQvTPSRYSPVPRHMLGEDDFT 399  Mexican tetra
XP_005997208 139 KPGPVHLN--DVYAPPDYAST------FSALADNHVSHNSsm-tYMGGVEskpp-fvpPQvTPARYSPIPRHMIGEDDFT 208  coelacanth
XP_004916882 338 KPGPVHLN--EIYAPPDYAST------FT--VDNHISHNStlgaYLSSMEsksp-yppPQvTPSRFSPVPRHMLGEEDFT 406  western clawed...
XP_011618266 192 tPTSQFSHhvDRYSPPDLTS-------------------S----YMDPDYmcdypqalPPlSPRRYSPIPRGLMGDDDYS 248  torafugu
XP_007507664 328 KPGSVHLN--DMYAPPDYAST------FSALADNHISHNSsl-gYLGAVEskvaypapPQvPPSRYSPIPRHMLGEEDFT 398  gray short-tai...
2XKX_A       306 REPR 309  Norway rat
XP_014813767 478 RPPE 481  Philomachus pugnax
XP_011481840 340 RPPE 343  Japanese medaka
XP_004545693 398 REPR 401  zebra mbuna
XP_010784425 413 REPR 416  black rockcod
XP_007254471 400 REPR 403  Mexican tetra
XP_005997208 209 REPR 212  coelacanth
XP_004916882 407 REPR 410  western clawed frog
XP_011618266 249 REPR 252  torafugu
XP_007507664 399 REPR 402  gray short-tailed opossum
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