2N39


Conserved Protein Domain Family
DUF4208

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pfam13907: DUF4208 (this model, PSSM-Id:316429 is obsolete and has been replaced by 464035)
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Domain of unknown function (DUF4208)
This domain is found at the C-terminus of chromodomain-helicase-DNA-binding proteins. The exact function of the domain is undetermined.
Statistics
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PSSM-Id: 316429
Aligned: 109 rows
Threshold Bit Score: 54.9176
Created: 28-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2N39_A           5 SLDQKTFS-ICKERMRPVKAALKQLDRPEK---G---LSEREQLEHTRQCLIKIGDHITECLKEYTnp-eQIK-QWRKNL 75   human
68_pfamImport    1 KLKEEKWMeWCADVMEEEEQTLKRLQRLQT---TsidLPKEKVLLRIRRYLQLIGRKIDNIVQQHEvs-yKQS-RMTMRL 75  
Q7XAM4         202 QDKEEKWLeWCSEVLDDEQEILKRLDRLQN---TsvnLPKEKVLSRIRKYLQIIGNKIGEIVDQHSes-yKQS-RMAMRL 276  Japanese rice
24_pfamImport    1 KYDQTTLNk-CKQYLTPIKKHLEKFKHLSD---SsvtMSREDKLHKTKKYLLSLGNEITSVMDKHk----GNE-SLENHL 71  
Q54Q16        1777 YYDKNLLRk-CQQYLSPIKELLENFRSLSD---SkvqISREEKVSKTKKYLLSLGKEISIILDEKKs--aNIK-DLDSHL 1849 Dictyosteliu...
BAT03045       264 qdKEEKWLeWCSEVLDDEQEILKRLDRLQN---TsvnLPKEKVLSRIRKYLQIIGNKIGEIVDQHSes-yKQS-RMAMRL 338  Japanese rice
XP_001782004  1345 QSKEEKWHhWCAQMMEDQTRTLERLQRLQT---Df-sLPKEEVLRRVKTYLQTLGHKIDSILAENAta-pNPD-RMATRL 1418 Physcomitrel...
XP_011622955  1569 ETKEEKWReWCAEIMSDEIRTLRRLEKLQTtsvD---LPKEEAIFKVKTYLQVLGKKIDFIVKEHGna-rNYI-RMTTRL 1643 Amborella tr...
XP_002970703  1360 KERDQRWHnWCEGVMKGEVRTLKRLQNLKSa-hS---ESNEKVVVRVKKYLQKLGQKIDSILDDNKgekcNPQ-KMAMRL 1434 Selaginella ...
XP_004355670  1588 erpdtrlllkCEQYLQPVQKHLDKFKNLS----D---LEREAKVRKTKKYMLSLGGEITKIVGHQRgt-eDIKnKLEKHL 1659 Dictyosteliu...
2N39_A          76 WIFVSKFTEFDARKLHKLYK 95   human
68_pfamImport   76 WNYVSTFSNLTGERLHEIYS 95  
Q7XAM4         277 WNYVANFSSMSGEQLHDLYL 296  Japanese rice
24_pfamImport   72 WYYASQFTARGGEELRQLFN 91  
Q54Q16        1850 WYSASKYTASGGKELKSLYD 1869 Dictyostelium discoideum AX4
BAT03045       339 WNYVANFSsMSGEQLHDLYl 358  Japanese rice
XP_001782004  1419 WNYVSTFSNLKGDKLAEIYK 1438 Physcomitrella patens
XP_011622955  1644 WNHVANFSNLSGERLSEIYS 1663 Amborella trichopoda
XP_002970703  1435 WNYVARFSdLSGPDLSDLYH 1454 Selaginella moellendorffii
XP_004355670  1660 WLYASGFTaLGGDELKKLFD 1679 Dictyostelium fasciculatum
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