2VXD


Conserved Protein Domain Family
NPM1-C

?
pfam16276: NPM1-C (this model, PSSM-Id:318505 is obsolete and has been replaced by 465081)
Click on image for an interactive view with Cn3D
Nucleophosmin C-terminal domain
This domain, approximately 50 residues in length, is mainly found in Nucleophosmin proteins in mammalia species. Nucleophosmin, a nucleocytoplasmic shuttling protein, is related with cancer and involved in serveral cellluar functions, such as ribosome maturatation and export, centrosome duplication, and response to stress stimuli. This domain has a three-helix bundle which can bind G-quadruplex DNA and the interaction involves helices H1 and H2 of the NPM1-C domain mainly through electrostatic contacts with G-quadruplex phosphates, indicating a crucial role in rescuring its function in leukemia.
Statistics
?
PSSM-Id: 318505
Aligned: 13 rows
Threshold Bit Score: 75.5661
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
2VXD_A         5 EDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKS 53  human
XP_010717341 263 EEIKAKMQASVDKGCSLPKLEPKFANYVKNCFRTEDQKVIQALWQWRQS 311 turkey
NP_955460    229 aDIKSKMMESVAKGVSLPKVQLKFENYVNNCFKGTDPKVVEELWKWRQT 277 zebrafish
XP_012814195 221 DEIKAKMQTSLEKGTVLPKVEVKFANYVKNCFRTENQKVIQDLFKWRQS 269 western clawed frog
XP_015204814 213 aEIKAKMMVGVEKGVMLPKVEAKFENFVKNGFKVDDKNTIQELWKWRQT 261 spotted gar
XP_013130005 265 PEIKAKMMEAVKKGVTLPKAQPKFENFVKHGHKVTDPKVIAELWKWRQa 313 Nile tilapia
XP_004076618 239 PEIKAKIMESVKKGVALPKVQAKFENFMKHGQNVTDAKVISELWKWRQT 287 Japanese medaka
XP_014325934 246 PQLKIKLMEAMKKGVMLPKVQPKFENFVKNSNKVCDPQIIADLWKWRQS 294 southern platyfish
XP_015464311 245 PEIKAKILASVEKGVSLPKLQPKFENLVKNGYKVSDPKVFFVLWllifw 293 Mexican tetra
XP_005924142 243 PEIKSKLSTAAKEGKPLPKTEPKFENYLRSAFKISDKQVVKDLWSFVQT 291 Burton's mouthbrooder
XP_005173145 248 SEVKSKLTSAAKEGKPFPKTEQKFENFARSSFKISDKQVIKDLWNFVQS 296 zebrafish
CAG04672     241 PEIKNKLSTAAKEGKPLPKTEQKFENFVKSSFKITDKKVVKDLWTFVQS 289 spotted green pufferfish
AAA36473      33 EDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKS 81  human
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap