Conserved Protein Domain Family
Ig5_Contactin

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cd04969: Ig5_Contactin (this model, PSSM-Id:319278 is obsolete and has been replaced by 409358)
Fifth immunoglobulin (Ig) domain of contactin
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Statistics
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PSSM-Id: 319278
Aligned: 7 rows
Threshold Bit Score: 124.869
Created: 15-Feb-2007
Updated: 18-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
NP_037357     424 GGDISIECKPNAFPKASISWKRGTenlk--------------qskRVFFLEDGSLKICNVTRSDAGSYTCVATNQFGngK 489  Norway rat
P68500        495 DRGVLIECEPQGSPKPAISWRKGDkavr--------------ankRICLVPDGSLRILNASKADEGKYICQGVNIFGsaE 560  house mouse
NP_001085050  423 GGSVLIECKPKASPKPSTTWKKGKellk--------------espRISILDDGTLKISNLTKADAGSYTCTASNHFGtaS 488  African clawe...
P14781        420 GGRVIIECKPKAAPKPKFSWSKGTellv--------------ngsRIHIWDDGSLEIINVTKLDEGRYTCFAENNRGkaN 485  chicken
Q02246        433 GGEILIPCQPRAAPKAVVLWSKGTeilv--------------nssRVTVTPDGTLIIRNISRSDEGKYTCFAENFMGkaN 498  human
P28685        428 SGKVIIPCQPRAAPKATVLWTKGTellt--------------nssRVTITADGTLILQNISKSDEGKYTCFAENFMGkaN 493  chicken
BAE94190      484 GMDVIIPCKPEGSPAPTITWSFNGgtltlgptnfdqilgkiscagDICIMPNRNLFIKSVKTSHIGMYTCTAVNVLGtaS 563  Dugesia japonica
NP_037357     490 SSGSLIV 496  Norway rat
P68500        561 IIASLSV 567  house mouse
NP_001085050  489 STGTLVV 495  African clawed frog
P14781        486 STGVLEM 492  chicken
Q02246        499 STGILSV 505  human
P28685        494 STGILSV 500  chicken
BAE94190      564 SSAYLDV 570  Dugesia japonica
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