1Z9M


Conserved Protein Domain Family
Ig1_Necl_like

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cd05717: Ig1_Necl_like (this model, PSSM-Id:319294 is obsolete and has been replaced by 409382)
Click on image for an interactive view with Cn3D
First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules
Ig1_Necl_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2), and similar proteins. At least five nectin-like molecules have been identified (Necl-1 to Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. This group also contains Class-I MHC-restricted T-cell-associated molecule (CRTAM), whose expression pattern is consistent with its expression in Class-I MHC-restricted T-cells.
Statistics
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PSSM-Id: 319294
Aligned: 5 rows
Threshold Bit Score: 156.905
Created: 17-Aug-2007
Updated: 18-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interface
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:1Z9M_A, human CADM3 (Necl-1) N-terminal IgV domain dimer interface, contacts based on 3.5 A distance.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                               #  #    ## #     # #                                  
1Z9M_A     42 QPWTSDETVVAGGTVVLKCQVkdhEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTphELSISISNVALADEGEYTCS 121 human
AAT98593   17 SVAVQHMTVMEGETLTIKCHIrnaHRSHVEWKNPNGHVMFFNDHKALRDKRYKIINLSesDFSVSVSDVTFKDGGLYTCL 96  rainbow trout
O95727     20 TNHTETITVEEGQTLTLKCVTslrKNSSLQWLTPSGFTIFLNEYPALKNSKYQLLHHSanQLSITVPNVTLQDEGVYKCL 99  human
AAI25104   46 NLFTKDVTVIEGEVATISCQVnksDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLLNFSssELKVSLTNVSISDEGRYFCQ 125 human
AAI12137   26 FPLTQNVTVVEGGTAILTCRVdqnDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASwhELSISVSDVSLSDEGQYTCS 105 human
Feature 1      #             
1Z9M_A    122 IFTmpVRTAKSLVTV 136 human
AAT98593   97 HYTkvPVVKSVTVTV 111 rainbow trout
O95727    100 HYSdsVSTKEVKVIV 114 human
AAI25104  126 LYTdpPQESYTTITV 140 human
AAI12137  106 LFTmpVKTSKAYLTV 120 human

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