Conserved Protein Domain Family
Ig_HHLA2

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cd16091: Ig_HHLA2 (this model, PSSM-Id:319340 is obsolete and has been replaced by 409512)
Immunoglobulin (Ig) domain in HERV-H LTR-associating 2
HERV-H LTR-associating 2 (HHLA2) is a protein ligand found on the surface of monocytes which is believed to regulate cell-mediated immunity by binding to a receptor on T lymphocytes and inhibiting the proliferation of these cells. Alternate splicing results in multiple transcript variants. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Statistics
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PSSM-Id: 319340
Aligned: 13 rows
Threshold Bit Score: 145.545
Created: 22-Apr-2015
Updated: 18-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CDR01079      41 CVLPCsflp-----gseeVIHWMkpedk--dltiHSYYYSTDQLKQQsqryrGRTALFndq-ipkGNASLLLrgitlQDQ 112 rainbow trout
CDQ91678      34 CMLPCsftp-----tgavVIHWYkqq-----ipvHSYYYNKDQYGLQnkhfnGRTCLFnsq-iahGNASLLLkrikvQDK 102 rainbow trout
XP_011490855 127 CILPCsftp-----gdylEIYWVqltpt--qagfHSYYDNKDHLEHQhqrfrGRTSLFqdq-iskGNASLQLtgvkvQDE 198 Japanese medaka
ABD61715      43 CVLPCtftp-----ggeeVVHWVqlkeg--iipvHSYYRDQDQLSGQnqsfrNRTSLFrdk-isgGNASLQLtglqlQDQ 114 turbot
XP_006809145  36 CILPCqfqp-----gpeeVIHWMten-----iavHSFYYNKDQLGSQnqrfkGRTSIFkdq-issGNASLLLknvnsQDG 104 Neolamprologus ...
XP_006807999  39 CVLPCsfqs-----gsdvFIHWVqgta---nirvHSFYHNKDQLGDQdqrfrNRTSLFkdq-isvGNASLQVtgvtiQDQ 109 Neolamprologus ...
KFV64677      13 CILPCsfsp-----gheaAIHWMrgn-----rtvHSYYNQGDRLERQdpdykTRTHLFhqd-ipnGNASLKLsnltvTDE 81  downy woodpecker
XP_001337747  34 CMLPCksd-------yhsIIHWYkdk-----apvHSFYRDADQLAHQseeykGRTSLLpaseintGNVSLMLknikiQDE 101 zebrafish
ACH85300      17 CVLTCsfkp-----nedeVVHWYkqq-----icvHSYYYQSDQLQLQnghfsGRTSLFkdq-lvhGNASLLLkrvdvSDE 85  Atlantic salmon
XP_005817228 110 CILPCsfqs-----ygepILHWTqless--elrvHSYYDNQDQLGPQnenfrGRTSLFqdq-isrGNASLLLrevqlQDQ 181 southern platyfish
AAH96014      53 IILPCtftp-----gedvVIHWYkpnnh--krflHIYINGKDQLEKQdntykGRTELFsse-innGNASLLLrniqeSDA 124 western clawed ...
XP_006628073  70 CVLPCrfrp-----agdeVIHWKkds-----lhvHSYYHQADQLSNQdlqynGRTALFkdqlltlGNASLLLrhikvQDK 139 spotted gar
AHG59322      31 VILSCtfphkpdsgtrrvMVVWQrkdssgsdqvvHSYYYQRDQLDQQgeayrNRTQIFpee-fckGNASLKLmrvrlEDE 109 Menado coelacanth
CDR01079     113 GRYKCYTstik-gnmESFINI 132 rainbow trout
CDQ91678     103 GRYKCYTstrk-rnqETFVNL 122 rainbow trout
XP_011490855 199 GSYKCFTrtit-dvgGIYINM 218 Japanese medaka
ABD61715     115 GRYKCYTstisggnkESFINL 135 turbot
XP_006809145 105 GRYRCYTsttr-gnqELFIQL 124 Neolamprologus brichardi
XP_006807999 110 GRYKCHIssie-gnqESFVNL 129 Neolamprologus brichardi
KFV64677      82 GNYTCYVgtle-nstEVKVML 101 downy woodpecker
XP_001337747 102 GRYKCYTandk-snhEQFVSV 121 zebrafish
ACH85300      86 GLYKCYTstvm-gnkETFVDV 105 Atlantic salmon
XP_005817228 182 GRYSCYIstik-gheESIIRL 201 southern platyfish
AAH96014     125 NQYVCYVgtyt-dktEAIVKL 144 western clawed frog
XP_006628073 140 GRYQCSIstqm-gsnESSVIV 159 spotted gar
AHG59322     110 GRYTCYVgneq-dnvEHSVDL 129 Menado coelacanth
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