2CS3


Conserved Protein Domain Family
vRING-HC_IRF2BP1_like

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cd16511: vRING-HC_IRF2BP1_like (this model, PSSM-Id:319425 is obsolete and has been replaced by 438174)
Click on image for an interactive view with Cn3D
variant of RING finger, HC subclass, found in interferon regulatory factor 2-binding protein IRF-2BP1, IRF-2BP2, and similar proteins
The family includes IRF-2BP1, IRF-2BP2, and their homolog, IRF-2BP-like, also known as IRF-2BPL or C14orf4. IRF-2BP1 and IRF-2BP2 are nuclear proteins that bind to the C-terminal repression domain of IRF-2 and act as an IRF-2-dependent transcriptional corepressors, both enhancer-activated and basal transcription. IRF-2BPL is expressed in the mediobasal hypothalamus and plays a critical function in regulating the female reproductive neuroendocrine axis. All family members contain a C-terminal C3HC4-type RING-HC finger with a partially new pattern.
Statistics
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PSSM-Id: 319425
Aligned: 20 rows
Threshold Bit Score: 91.3067
Created: 5-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding sitevariant RING-HC
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:2CS3; Homo sapiens IRF-2BPL binds two Zn2+ ions through its RING-HC finger.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #           #     #  #  #                                       #     #    
2CS3_A        16 LCCTICHeRLEDTHFVQCPSVpsHKFCFPCSRESIKaqg------------------------atgEVYCPSGEKCPLVG 71  human
ELT98049     476 LKCTLCNeRLEDTHFVQCPSVseHKFCFPCSRDSIKrqg------------------------agaEVYCPSGKKCPLVG 531 Capitella sp. I...
EFX75404     573 LKCTICQeRLEDTHFVQCPSIshHKFCFPCSRDSIKqqg------------------------agsEVYCPSGEKCPLAG 628 common water flea
EKC37725     515 LKCTLCHeRLEDTHFVQCPSIseHKFCFPCSRNSIKmqg------------------------agsEVYCPSGKKCPLVG 570 Pacific oyster
XP_784488    578 LKCTLCHeRLEDTHFVQCPSVsnHKFCFPCSRDSIKkqg------------------------sgsEVYCPSGAKCPLAG 633 purple sea urchin
XP_003385563 448 MECLICHkALDDTRFVQCPSMgpHKFCFSCSRDSIKqqvs-----------------------sskDVYCPSGLKCLVQG 504 Amphimedon quee...
CBY34938     495 LLCHLCKnRLEASHFVQCPSQqlHRFCFPCCQRTIRrslnd---------------------npttEVFCPSGVRCAIAG 553 Oikopleura dioica
CCD74831     241 ILCNLCPrHLEGSHFVQCPANleHRFCFQCAKVYLEsmmnehqahnnnnnnnqanknvnmnnlknlEIYCPSGKKCVLPG 320 Schistosoma man...
EDO43062     247 LRCSLCRdKLEDTHFVQCPSImhHKFCFPCSRDSIKkqg------------------------agtEVFCPSGERCPLQG 302 starlet sea ane...
XP_013407679 524 LKCTLCQeRLEDTHFVQCPSVgdHKFCFPCSRESIKrqg------------------------pgsEVYCPSGKKCPLVG 579 Lingula anatina

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