2J4Y,2Z73,2ZIY,1F88


Conserved Protein Domain Family
7tmA_Opsins_type2_animals

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cd14969: 7tmA_Opsins_type2_animals (this model, PSSM-Id:320100 is obsolete and has been replaced by 381741)
Click on image for an interactive view with Cn3D
type 2 opsins in animals, member of the class A family of seven-transmembrane G protein-coupled receptors
This rhodopsin family represents the type 2 opsins found in vertebrates and invertebrates except sponge. Type 2 opsins primarily function as G protein coupled receptors and are responsible for vision as well as for circadian rhythm and pigment regulation. On the contrary, type 1 opsins such as bacteriorhodopsin and proteorhodopsin are found in both prokaryotic and eukaryotic microbes, functioning as light-gated ion channels, proton pumps, sensory receptors and in other unknown functions. Although these two opsin types share seven-transmembrane domain topology and a conserved lysine reside in the seventh helix, type 1 opsins do not activate G-proteins and are not evolutionarily related to type 2. Type 2 opsins can be classified into six distinct subfamilies including the vertebrate opsins/encephalopsins, the G(o) opsins, the G(s) opsins, the invertebrate G(q) opsins, the photoisomerases, and the neuropsins.
Statistics
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PSSM-Id: 320100
Aligned: 70 rows
Threshold Bit Score: 205.133
Created: 10-May-2005
Updated: 26-Jul-2017
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     #  
2J4Y_A        38 SMLAAYMFLLIMLGFPINFLTLYVTVQHKKlr-tpLNYILLNLAVADLFMVFGGf-TTTLYTSLHgyfvfgptgCNLEGF 115 cattle
2ZIY_A        34 YSLGIFIGICGIIGCGGNGIVIYLFTKTKSlq-tpANMFIINLAFSDFTFSLVNgfPLMTISCFLkkwifgfaaCKVYGF 112 Japanese flying...
EKC20546      23 YIFGVIYMLLNVVATTGNVVVLYVFFRSKKlh-saIYFMISALCLGDLLMSSVGl-TILSIASFAtywvlgdwgCIAYGT 100 Pacific oyster
EKC20545      29 YAIGVAFVLIMLISTLGNGGVMYVFIRTRNlr-tpNYFLVSALCLGDFLMSTLGm-PMFITSCFFtrwilgrvgCLVYGT 106 Pacific oyster
AFZ78084       7 SVFAIIAAVICVLGVPLNGLVCWVFYNNREll-naPNIFIASVAFSDFLYCISCl-PLLVISNAYgkwiygpigCKATAF 84  elkhorn coral
NP_001026387  17 FAIGTALLVEALLGFCLNGLTIISFRKIKElr-tpSNLLVLSIALADCGICINAf-IAAFSSFLRywpy-gsegCQIHGF 93  chicken
AFK83788      37 ISLSIAMGCVCVGSVFGNLLVLISLVRERPlpnpaVQLIFRHLSLANFLLACIGe-PLVVISLASgkwvwgesmRLFEAF 115 Mnemiopsis leidyi
AFK83789      18 YILTSLLCMNCIFSLVGNMLVIYTFLRERPlg-apLRTILCHLAITNLMIAGIGe-PMVVISGFNlrwvfgemgRKIEAY 95  Mnemiopsis leidyi
EDO47104      10 TAYWVTMTVILTLGVIVNIAALWICFRPENrk-keITPLIANIAVADLILITCGh-TSTHLRGAAlqrn--eppCMWIAI 85  starlet sea ane...
EDO39955       4 SVFAGFVAVVFVFRIVSQIVTILIFQRNENrh-frLAPYFINTAISNLILILSSy-PLAFVASLShnlhegtfiCDFTGY 81  starlet sea ane...
Feature 1         ##  ##                                                                   ####  
2J4Y_A       116 FATLGGEIALWSLVVLAIERYVVVCKPmsnf----rfgENHAIMGVAFTWVMALACAAPPlVGWSRYIPEgmqCSCGIDY 191 cattle
2ZIY_A       113 IGGIFGFMSIMTMAMISIDRYNVIGRPmaas---kkmsHRRAFIMIIFVWLWSVLWAIGPiFGWGAYTLEgvlCNCSFDY 189 Japanese flying...
EKC20546     101 LMTFLGLMQITLLTVIAVTRYIFVVHNnn-------igPCSAKVITLLCTLYALGFSVAPlLGWSKFVLEpigTSCGPNW 173 Pacific oyster
EKC20545     107 LMTFLGLSQITLLASIAFTRYRYVVNNcs-------idTLFAKIVVIMCYLYAFIFSLAPlFGWSRPVVEpigTSCGPNW 179 Pacific oyster
AFZ78084      85 IATWSGLTSLMNLSVASYERYSTLAFLctkn---rtftRRTAACYSAAMCLYALFWSLMPlCGWSGFELEgigTSCSVRW 161 elkhorn coral
NP_001026387  94 QGFLTALASISSSAAVAWDRYHHYCTRsk-------lqWSTAISMMVFAWLFAAFWATMPlLGWGEYDYEplrTCCTLDY 166 chicken
AFK83788     116 WVTTFGLLSMMILALISLEQYSRFVRQkq-------lrTVQVAVILSGIYLLALIFGVSPlLGWCGYGPEgygVSNSLLW 188 Mnemiopsis leidyi
AFK83789      96 TVTASGLMAMSLLAFVSIERYLRVTPGqkf-----lirQTTSVRVCTLMWIYNVIYASLPfYGIAAWRGEgigISNSLSW 170 Mnemiopsis leidyi
EDO47104      86 LNGIVGIVTIVTMASINILLLRKMQSVvmv-----nlpACRMAALIACIWGYSISVMSTPlLGWGSFYPGkssANCEPEW 160 starlet sea ane...
EDO39955      82 LVSVGSAGAFVTMAVLTFEIYQHVSSEanigqaieeekQWKTFKILGAIWIYSCLCLTPPlVGWSSMTLQsdkTNCAPNW 161 starlet sea ane...
Feature 1                       ##   #                                                           
2J4Y_A       192 ytpheetnNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVkeaaaqq---------------------------------- 237 cattle
2ZIY_A       190 isr--dstTRSNILCMFILGFFGPILIIFFCYFNIVMSVsnhekemaamakr---------------------------- 239 Japanese flying...
EKC20546     174 vgi--ewsDVSFNMTLFFLCFLAPLSFILFSYIMIFWKIkkkri------------------------------------ 215 Pacific oyster
EKC20545     180 agt--eprDVSYNLTIFVLCFFVPLSIITFSYFMIYLKIkrkri------------------------------------ 221 Pacific oyster
AFZ78084     162 ksk--nklDMSYNLCLIIACYVLPVSVLVTSYYKCYREIakstwrakstw------------------------------ 209 elkhorn coral
NP_001026387 167 skg--drnYITFLFALSIFNFMIPGFIMMTAYQSIHQKF----------------------------------------- 203 chicken
AFK83788     189 nel--tdnSASYIVTVMIVGYFFPLVIITYCYRSIYQLVqaqsnvaivrtmvsv-------------------------- 240 Mnemiopsis leidyi
AFK83789     171 dtn--nkiDVAYVMVMMATGYFIPLAVITFCYNRILHFVkqavdvydeverlghnipadgmtmetqlskthastagpgvs 248 Mnemiopsis leidyi
EDO47104     161 tsr--glgDISYNVTLLVTAFVFPMAVIIYTFYRIKRRLrneipta---------------------------------- 204 starlet sea ane...
EDO39955     162 vtq--dvkGLSYLVFLTTSVFIIPMAVTGVYFYKLYRYFhntdinvts-------------------------------- 207 starlet sea ane...
Feature 1                                                                                     #  
2J4Y_A       238 --------------------------------------------------qesattqKAEKEVTRMVIIMVIAFLICWLP 267 cattle
2ZIY_A       240 --------------------------------------------lnakelrkaqagaNAEMRLAKISIVIVSQFLLSWSP 275 Japanese flying...
EKC20546     216 ----------------------------------------------------qkkneTYEIHVSTTILFMIVAFLGSWTP 243 Pacific oyster
EKC20545     222 ----------------------------------------------------hkkndGYENHVTVTILLMIVAFLLSWSP 249 Pacific oyster
AFZ78084     210 ----------------------------------------------grqspftkrtfVMERKMMVLFGVMTVAFLVAWTP 243 elkhorn coral
NP_001026387 204 ---------------------------------------------------------KKSGHYKFNTGLPLKTLVICWGP 226 chicken
AFK83788     241 -------------------------------------------nvtslavnrnhsliVQERKLATTITFVILSFFFAWTP 277 Mnemiopsis leidyi
AFK83789     249 vtgessllnagdqegpsrggtsktgdtvtpevsvdtttkkqtstvkdsseepgnrikAAEKKISNVVAIIIVSFFISWTP 328 Mnemiopsis leidyi
EDO47104     205 ---------------------------------------------------fpqgrrRMYTTLSRMMVGVTVAFTLSWSP 233 starlet sea ane...
EDO39955     208 -------------------------------------------------npsfayklEHYKVTQKMVFAAITVNAICWSP 238 starlet sea ane...
Feature 1         #                       #   #                     
2J4Y_A       268 YAGVAFYIfthq-gscfGPIFMTIPAFFAXTSAVYNPVIYIMMNkqFRNCM 317 cattle
2ZIY_A       276 YAVVALLAqfgp-lewvTPYAAQLPVMFAKASAIHNPMIYSVSHpkFREAI 325 Japanese flying squid
EKC20546     244 YAFMALYIvitk-nnqiHPLLAALPLVFAKCAPIWNPYIYFMRDtkFNHEC 293 Pacific oyster
EKC20545     250 YAALAMYViitk-nstmHLALSSVPVVLAKTAPLWNPYIYFVRDrrFNKEC 299 Pacific oyster
AFZ78084     244 YAVVSLISmiag-pdviSDVTASIPAYFAKSSSCYNPVIYVFLYkrLRRQM 293 elkhorn coral
NP_001026387 227 YCLLSFYAaien-vmfiSPKYRMIPAIIAKTVPTVDSFVYALGNenYRGGI 276 chicken
AFK83788     278 YVLINLLNmftt-wvvkYKILATIPALFAKSSTLWWIIIYSMMDkrIKKAC 327 Mnemiopsis leidyi
AFK83789     329 YTIVNLLVtfdkadylaSGINATIPAFLAKTSTVWSPIIYCFMNgeVRNAN 379 Mnemiopsis leidyi
EDO47104     234 DAILSVISmv-----tgRPIIHVVPSLMAKSSVIYTPIVYIAFSrsFRSAV 279 starlet sea anemone
EDO39955     239 YAIYSLASsikg-eelsQGAGSLIPSYFGKVSAIFNPIVYWIFNtrFRNTS 288 starlet sea anemone

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