4IAQ,4IAR


Conserved Protein Domain Family
7tmA_5-HT1_5_7

?
cd15064: 7tmA_5-HT1_5_7 
Click on image for an interactive view with Cn3D
serotonin receptor subtypes 1, 5 and 7, member of the class A family of seven-transmembrane G protein-coupled receptors
This group includes serotonin receptor subtypes 1, 5, and 7 that are activated by the neurotransmitter serotonin. The 5-HT1 and 5-HT5 receptors mediate inhibitory neurotransmission by coupling to G proteins of the G(i/o) family. The 5-HT1 receptor subfamily includes 5-HT1A, 5-HT1B, 5-HT1D, 5-HT1E, and 5-HT1F. There is no 5-HT1C receptor subtype, as it has been reclassified as 5-HT2C receptor. The 5-HT5A and 5-HT5B receptors have been cloned from rat and mouse, but only the 5-HT5A isoform has been identified in human because of the presence of premature stop codons in the human 5-HT5B gene, which prevents a functional receptor from being expressed. The 5-HT7 receptor is coupled to Gs, which positively stimulates adenylate cyclase activity, leading to increased intracellular cAMP formation and calcium influx. In the CNS, serotonin is involved in the regulation of appetite, mood, sleep, cognition, learning and memory, as well as implicated in neurologic disorders such as migraine, schizophrenia, and depression.
Statistics
?
PSSM-Id: 320192
Aligned: 13 rows
Threshold Bit Score: 326.978
Created: 17-Nov-2008
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:4IAQ: Human 5-HT1B G protein-coupled receptor binds the agonist antimigraine medication dihydroergotamine, contacts at 4A.
    View structure with Cn3D
  • Structure:4IAR: Human 5-HT1B binds ergotamine, contacts at 4A.
    View structure with Cn3D

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                 ##  
4IAQ_A     21 VLLVMLLALITLATTLSNAFVIATVYRTRKLhtpANYLIASLAVTDLLVSILVMPISTMYTVtg-rWTLGqvvCDFWLSS 99 
4IAR_A     21 VLLVMLLALITLATTLSNAFVIATVYRTRKLhtpANYLIASLAVTDLLVSILVMPISTMYTVtg-rWTLGqvvCDFWLSS 99 
P28221     39 ISLAVVLSVITLATVLSNAFVLTTILLTRKLhtpANYLIGSLATTDLLVSILVMPISIAYTIth-tWNFGqilCDIWLSS 117 human
P28566     23 MLICMTLVVITTLTTLLNLAVIMAIGTTKKLhqpANYLICSLAVTDLLVAVLVMPLSIIYIVmd-rWKLGyflCEVWLSV 101 human
P08908     37 VITSLLLGTLIFCAVLGNACVVAAIALERSLqnvANYLIGSLAVTDLMVSVLVLPMAALYQVln-kWTLGqvtCDLFIAL 115 human
P30939     24 ILVSLTLSGLALMTTTINSLVIAAIIVTRKLhhpANYLICSLAVTDFLVAVLVMPFSIVYIVre-sWIMGqvvCDIWLSV 102 human
P28285    227 AVTSVLLGLMILVTIIGNVFVIAAIILERNLqnvANYLVASLAVADLFVACLVMPLGAVYEIsq-gWILGpelCDIWTSC 305 fruit fly
EEN62182   17 ILTGTSLSIVTLTSILGNALVLVTLTVERHLrtpANSLIGSLAVADLLVSLLVMPISASYELtq-tWRLGramCDIWIIL 95  Florida lancelet
BAE78591   47 VLLSIGLGFIIIGTIFGNALTLTAISKHRPLqtpQNHLIASLAVADLMVAILVMPLSLTKEIvv-vWIFGpilCDVWISL 125 Hemicentrotus pulc...
EKC22048   15 IFIAIFAVLIIIGTVFGNSLVILSILMDRRLhrvGNIFIVSLALSDILVGLCVTPFALVYQLqg-vWNFGsifCDFWISM 93  Pacific oyster
EEN51711    4 VLTGLALSLLILVAILGNAMVLMAFIKDRRLctpANYLIVSMAVADLLVSVSVMPLNATYELme-tWRLGrpaCDLWISL 82  Florida lancelet
Q91559     71 IVIGVVLSIITLFTIAGNALVIISVCIVKKLrqpSNYLVVSLAAADLSVAVAVMPFVIITDLvggeWLFGkvfCNVFIAM 150 African clawed frog
P47898     41 VLILTLLGFLVAATFAWNLLVLATILRVRTFhrvPHNLVASMAVSDVLVAALVMPLSLVHELsgrrWQLGrrlCQLWIAC 120 human
Feature 1     ##  ##                                                                   #      
4IAQ_A    100 DITCCTASIWHLCVIALDRYWAITDAveYSAKRtPKRAAVMIALVWVFSISISLPPFfwrqak---aeeevsECVVntdH 176
4IAR_A    100 DITCCTASIWHLCVIALDRYWAITDAveYSAKRtPKRAAVMIALVWVFSISISLPPFfwrqak---aeeevsECVVntdH 176
P28221    118 DITCCTASILHLCVIALDRYWAITDAleYSKRRtAGHAATMIAIVWAISICISIPPLfwrqak---aqeemsDCLVntsQ 194 human
P28566    102 DMTCCTCSILHLCVIALDRYWAITNAieYARKRtAKRAALMILTVWTISIFISMPPLfwrshrr--lspppsQCTIqhdH 179 human
P08908    116 DVLCCTSSILHLCAIALDRYWAITDPidYVNKRtPRRAAALISLTWLIGFLISIPPMlgwrtpe--drsdpdACTIs-kD 192 human
P30939    103 DITCCTCSILHLSAIALDRYRAITDAveYARKRtPKHAGIMITIVWIISVFISMPPLfwrhqg----tsrddECIIkhdH 178 human
P28285    306 DVLCCTASILHLVAIAVDRYWAVTNId-YIHSRtSNRVFMMIFCVWTAAVIVSLAPQfgwkdpdylqrieqqKCMVs-qD 383 fruit fly
EEN62182   96 DVTCCTASIMSLCIIALDRYWAITDAvkYVHKRtPKRMMVMIGVVWLLSLCISIPPVfgwrkpe--dtadpnNCLIs-qD 172 Florida lancelet
BAE78591  126 DVLLCTASILSLCMISLDRFWAITKPikYPKYRtARTMVILIALAWFLSSIISTSPFfgwrgn---qsidayTCQIs-qN 201 Hemicentrotus pulc...
EKC22048   94 DIICCTASIVNLCVISYDRYNAISQPlhYAQFRtVRRALCLVILAWTYSIVIALPPLlgwktp---nqmtinSCVIs-qN 169 Pacific oyster
EEN51711   83 DVTSCTASILSLCVIALDRYWAITDAvkYMHQRtTRRAVVMVALVWVASLCISVPPLfgwrtaq--dvadplVCRIs-qD 159 Florida lancelet
Q91559    151 DVMCCTASIMTLCVISVDRYLGITRPltYPARQnGKLMAKMVFIVWLLSASITLPPLfgwakn----vnverVCLIs-qD 225 African clawed frog
P47898    121 DVLCCTASIWNVTAIALDRYWSITRHmeYTLRTrKCVSNVMIALTWALSAVISLAPLlfgwget--ysegseECQVs-rE 197 human
Feature 1           #   #                                                                     
4IAQ_A    177 ILYTVYSTVGAFYFPTLLLIALYGRIYVEArsriadlednwetlndnlkviekadnaaqvkdaltkmraaaldaqkatpp 256
4IAR_A    177 ILYTVYSTVGAFYFPTLLLIALYGRIYVEArsriadlednwetlndnlkviekadnaaqvkdaltkmraaaldaqkatpp 256
P28221    195 ISYTIYSTCGAFYIPSVLLIILYGRIYRAArnrilnppslygkrfttahlitgsagsslcslnss--------------- 259 human
P28566    180 VIYTIYSTLGAFYIPLTLILILYYRIYHAAkslyqkrgssrhlsnrstdsqnsfasckltqtfcvsd------------- 246 human
P08908    193 HGYTIYSTFGAFYIPLLLMLVLYGRIFRAArfrirktvkkvektgadtrhgaspapqpkksvngesgsrnwrlgveskag 272 human
P30939    179 IVSTIYSTFGAFYIPLALILILYYKIYRAAktlyhkrqasriakeevngqvllesgekstksvstsyvl----------- 247 human
P28285    384 VSYQVFATCCTFYVPLLVILALYWKIYQTArkrihrrrprpvdaavnnnqpdggaatdtklhrlrlrlgrfstaksktgs 463 fruit fly
EEN62182  173 HAYTIFSTFGAFYIPLIIVLAVYYKIFRAAqarirkrinsrakmgl---------------------------------- 218 Florida lancelet
BAE78591  202 IAYTIFSTFGAYFIPMTIMMIVYARIYCEArkrirgktfnrgcqplnsavnyretanycdrkdseesnkspivkcdpasd 281 Hemicentrotus pulc...
EKC22048  170 VGYTFFSTIGAFYLPLVIMLCFYCKIFQVTwlrgkqwvrgpgnsliikfrqkkglnsyntfryccdsgkkegknlsiekn 249 Pacific oyster
EEN51711  160 YGYTIFSTFGAFYVPSAVILVVYWKIFRAAqrrirvrvgaqvpparrnkprssdnddtagesrpvtpvrhnrrqqksqdr 239 Florida lancelet
Q91559    226 FGYTVYSTAVAFYIPMTVMLVMYQRIFVAAkisaekhkfvniprlyeqegiycledklpp-------------------- 285 African clawed frog
P47898    198 PSYAVFSTVGAFYLPLCVVLFVYWKIYKAAkfrvgsrktnsvspiseavevkdsa------------------------- 252 human
Feature 1                                                                                     
4IAQ_A    257 kledksp------------------------------------------------------------------------- 263
4IAR_A    257 kledks-------------------------------------------------------------------------- 262
P28221        --------------------------------------------------------------------------------     human
P28566        --------------------------------------------------------------------------------     human
P08908    273 galcanga------------------------------------------------------------------------ 280 human
P30939        --------------------------------------------------------------------------------     human
P28285    464 avgvsgpasggralglvdgnstntvntvedtefsssnvdsksragveapstsgnqiatvshlvalakqqgkstakssaav 543 fruit fly
EEN62182      --------------------------------------------------------------------------------     Florida lancelet
BAE78591  282 nhkggvfdgstlshsmlaasapn--------------------------------------------------------- 304 Hemicentrotus pulc...
EKC22048  250 sdeskenhiekvtvdngmqpnfdhqiniekptctkskrptlvrqis---------------------------------- 295 Pacific oyster
EEN51711  240 enisi--------------------------------------------------------------------------- 244 Florida lancelet
Q91559        --------------------------------------------------------------------------------     African clawed frog
P47898        --------------------------------------------------------------------------------     human
Feature 1                                                                                     
4IAQ_A        --------------------------------------------------------------------------------    
4IAR_A        --------------------------------------------------------------------------------    
P28221        --------------------------------------------------------------------------------     human
P28566        --------------------------------------------------------------------------------     human
P08908        --------------------------------------------------------------------------------     human
P30939        --------------------------------------------------------------------------------     human
P28285    544 ngmapsgrqeddgqrpehgeqedreeledqdeqvgpqpttatsattaagtnesedqckangvevledpqlqqqleqvqql 623 fruit fly
EEN62182      --------------------------------------------------------------------------------     Florida lancelet
BAE78591      --------------------------------------------------------------------------------     Hemicentrotus pulc...
EKC22048      --------------------------------------------------------------------------------     Pacific oyster
EEN51711      --------------------------------------------------------------------------------     Florida lancelet
Q91559        --------------------------------------------------------------------------------     African clawed frog
P47898        --------------------------------------------------------------------------------     human
Feature 1                                                                                     
4IAQ_A    264 ----------------------------------------------------------------dspemkdfrhgfdilv 279
4IAR_A    263 -----------------------------------------------------------------pdspemkdfrhgfdi 277
P28221        --------------------------------------------------------------------------------     human
P28566        --------------------------------------------------------------------------------     human
P08908    281 ---------------------------------------------------------------vrqgddgaalevievhr 297 human
P30939        --------------------------------------------------------------------------------     human
P28285    624 qksvksgggggastsnattitsisalspqtptsqgvgiaaaaagpmtaktstltscnqshplcgtanespstpeprsrqp 703 fruit fly
EEN62182      --------------------------------------------------------------------------------     Florida lancelet
BAE78591  305 -----------------------------------------------lqnqhkvgedvkkdtfvtsltvpgqhqatftst 337 Hemicentrotus pulc...
EKC22048  296 ------------------------ylsstdsgyttsgeasvssdaredqgcmpsiaedeiiteivdietgkliikgrdgq 351 Pacific oyster
EEN51711  245 -----------------------------------------------------------------nvkvisvqpavhsrl 259 Florida lancelet
Q91559        --------------------------------------------------------------------------------     African clawed frog
P47898        --------------------------------------------------------------------------------     human
Feature 1                                                                 #  ##     #         
4IAQ_A    280 gqiddalklanegkvkeaqaaaeqlkttrnayiqkyllmaARERKATKTLGIILGAFIVCWLPFFIISLVMPICkda--c 357
4IAR_A    278 lvgqiddalklanegkvkeaqaaaeqlkttrnayiqkylaARERKATKTLGIILGAFIVCWLPFFIISLVMPICkda--c 355
P28221    260 ------lheghshsagsplffnhvkikladsalerkrisaARERKATKILGIILGAFIICWLPFFVVSLVLPICrds--c 331 human
P28566    247 ---fstsdpttefekfhasirippfdndldhpgerqqissTRERKAARILGLILGAFILSWLPFFIKELIVGLSiy---- 319 human
P08908    298 vgnskehlplpseagptpcapasferknernaeakrkmalARERKTVKTLGIIMGTFILCWLPFFIVALVLPFCess--c 375 human
P30939    248 --ekslsdpstdfdkihstvrslrsefkhekswrrqkisgTRERKAATTLGLILGAFVICWLPFFVKELVVNVCdkc--- 322 human
P28285    704 ttpqqqphqqahqqqqqqqqlssianpmqkvnkrketleaKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCaac--- 780 fruit fly
EEN62182  219 ------------------------sqalqsrivtqkkilfSKERKAAQTLGVITGVFVFCWLPFFLVALIGPFCshc--- 271 Florida lancelet
BAE78591  338 slreinsnespssqrsllsspsplpgqiqererrrramatAREHRATKTLGIVTGAFLVCWLPFFLHALIVPLCgea--c 415 Hemicentrotus pulc...
EKC22048  352 dtngvnipksipkpnvtgkkghvttarkrrrlkrkdtislPQERRAVRTLGIVVGCFLVCWLPFFIIAILVPLCphc--- 428 Pacific oyster
EEN51711  260 dsstttattpepqaggsscksasstattsvaqnlkkkivfSKERRAAKTLGIITGVFIVCWLPFFLVALIEPFCasc--- 336 Florida lancelet
Q91559    286 ----------kknskkkkaveefaslsklirqdrknisifKREQKAARTLGIIVGAFTFCWLPFFLLSTARPFIcgimcs 355 African clawed frog
P47898    253 ---------------kqpqmvftvrhatvtfqpegdtwreQKEQRAALMVGILIGVFVLCWIPFFLTELISPLCsc---- 313 human
Feature 1        #  ##  #   #                     
4IAQ_A    358 wfHLAIFDFFTWLGYLNSLINPIIYTMSNedFKQAF 393
4IAR_A    356 wfHLAIFDFFTWLGYLNSLINPIIYTMSNedFKQAF 391
P28221    332 wiHPALFDFFTWLGYLNSLINPIIYTVFNeeFRQAF 367 human
P28566    320 tvSSEVADFLTWLGYVNSLINPLLYTSFNedFKLAF 355 human
P08908    376 hmPTLLGAIINWLGYSNSLLNPVIYAYFNkdFQNAF 411 human
P30939    323 kiSEEMSNFLAWLGYLNSLINPLIYTIFNedFKKAF 358 human
P28285    781 qiSDSVASLFLWLGYFNSTLNPVIYTIFSpeFRQAF 816 fruit fly
EEN62182  272 hiSDVIKSVVLWLGYVNSMVNPFLYAFLNkdFQKSF 307 Florida lancelet
BAE78591  416 nvPRSLESIFLWLGYFNSMLNPIIYTKFNqdFQKAF 451 Hemicentrotus pulcherrimus
EKC22048  429 vfPKAVQSLALFLGYFNSACNPVIYTFFNkeFRAAF 464 Pacific oyster
EEN51711  337 tiSPLGRSVITWLGYANSAMNPVLYGFVNkdFQKAF 372 Florida lancelet
Q91559    356 cmPLRLERTLLWLGYTNSLINPLIYAFFNrdLRTTF 391 African clawed frog
P47898    314 diPAIWKSIFLWLGYSNSFFNPLIYTAFNknYNSAF 349 human

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap