3VJ6,1NEZ,1ZAG,1FRT


Conserved Protein Domain Family
MHC_I

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pfam00129: MHC_I (this model, PSSM-Id:333863 is obsolete and has been replaced by 395078)
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Class I Histocompatibility antigen, domains alpha 1 and 2
Statistics
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PSSM-Id: 333863
Aligned: 21 rows
Threshold Bit Score: 238.062
Created: 14-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3VJ6_A   2 PHSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRARWIEQEG-PEYWERETWKARDMGRNFRVNLRT 80  house mouse
P15978  26 SHSLRYFHTAVSRPGLGEPRFISVGYVDDTQFVRYDSDAENPRYEPRARWMEREG-PEYWEEQTLVAKGQELDYRVSLRN 104 Norway rat
P14429  23 QHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEG-PEYWERETQIAKGHEQSFRGSLRT 101 house mouse
P01898  26 SHSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRMEPRAPWMEQEG-PEYWERETQRAKGNEQSFHVSLRT 104 house mouse
P01900  26 SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEG-PEYWERETRRAKGNEQSFRVDLRT 104 house mouse
P14432  28 SHSLRYFYTALSRPAISEPWYIAVGYLDDTQFVRFNSSGETATYKLSAPWVEQEG-PEYWARETEIVTSNAQFFRENLQT 106 house mouse
P15979  24 LHTLRYIQTAMTDPGPGQPWFVTVGYVDGELFVHYNSTAR--RYVPRTEWIAAKAdQQYWDGQTQIGQGNEQIDRENLGI 101 chicken
P25311  27 RYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFFRYNSKDR--KSQPMGLWRQVEG-MEDWKQDSQLQKAREDIFMETLKD 103 human
1NEZ_A   2 SHSLRYFYTALSRPAISEPWYIAVGYLDDTQFARFDSAGETGTYKLSAPWVEQEG-PEYWARETEIVTSNAQFFRENLQT 80  house mouse
1ZAG_B   3 RYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFFRYNSKDR--KSQPMGLWRQVEG-MEDWKQDSQLQKAREDIFMETLKD 79  human
3VJ6_A  81 LLGYYNQSNDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQDYISLNEDLRSWTANDIASQISKHKSEAVDEAHQ-Q-RA 158 house mouse
P15978 105 LLSYYNQSEGGSHTIQRMYGCDVGSDGSLLRGYEQHAYDGRDYIALNEDLKTWAVADFAAWITRSKWQRNGAAER-S-RA 182 Norway rat
P14429 102 AQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEK-D-QA 179 house mouse
P01898 105 LLGYYNQSESGSHTIQWMYGCKVGSDGRFLRGYLQYAYDGRDYIALNEDLKTWTAADVAAIITRRKWEQAGAAEY-Y-RA 182 house mouse
P01900 105 ALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAER-D-RA 182 house mouse
P14432 107 MLDYYNLSQNGSHTIQVMYGCEVEFFGSLFRAYEQHGYDGPDYIALNEDLKTWTAADTAAEITRSKWEQAGYTEL-R-RT 184 house mouse
P15979 102 LQRRYNQT-GGSHTVQWMYGCDILEGG-PIRGYYQMAYDGRDFTAFDKGTMTFTAAVPEAVPTKRKWEEESEPER-W-KN 177 chicken
P25311 104 IVEYYNDS-NGSHVLQGRFGCEIENNR-SSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQrA-KA 180 human
1NEZ_A  81 MLDYYNLSQNGSHTIQVMYGCEVEFFGSLFRAYEQHGYDGQDYIALNEDLKTWTAADMAAEITRSKWEQAGYTEL-R-RT 158 house mouse
1ZAG_B  80 IVEYYNDS-NGSHVLQGRFGCEIE-NNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQ-RaKA 156 human
3VJ6_A 159 YLQGPCVEWLHRYLRLGNETL 179 house mouse
P15978 183 YLEGTCVEWLLRYLERGKETL 203 Norway rat
P14429 180 YLEGTCMQSLRRYLQLGKETL 200 house mouse
P01898 183 YLEAECVEWLLRYLELGKETL 203 house mouse
P01900 183 YLEGECVEWLRRYLKNGNATL 203 house mouse
P14432 185 YLEGPCKDSLLRYLENRKKTQ 205 house mouse
P15979 178 YLEETCVEWLRRYVEYGKAEL 198 chicken
P25311 181 YLEEECPATLRKYLKYSKNIL 201 human
1NEZ_A 159 YLEGPCKDSLLRYLENRKKTQ 179 house mouse
1ZAG_B 157 YLEEECPATLRKYLKYSKNIL 177 human
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