2PQI,1DM0


Conserved Protein Domain Family
RIP

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pfam00161: RIP 
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Ribosome inactivating protein
Statistics
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PSSM-Id: 333888
View PSSM: pfam00161
Aligned: 37 rows
Threshold Bit Score: 155.557
Threshold Setting Gi: 81545947
Created: 13-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2PQI_A        13 NYPYSAFIASVRKDVIKHCTD------HKGIfqPVLPPE------------KKVPELWLYTELK-TRTSS----ITLAIR 69  Zea mays
Q9KZ40        56 VPHYRSVVQQLRRGAGHLIHG------NNiye----------------tmgQGQNAGLVALNLY---NADwvhqTTLYFN 110 Streptomyces co...
Q32GM1        32 AKTYVDSLNVIRSAI--------------GT--PLQTISsggtsllmidsgTGDNLFAVDVRGI-DPEEGrfnnLRLIVE 94  Shigella dysent...
XP_002516360  54 EDVYSAFLNNLRKQLESGTTS------Y-SI--PVLRAQv----------aPSSDQRFVLVKLFn-PERS----TTMAID 109 castor bean
XP_015577395   9 aacYTNFIDGLRGLLAEGGSV------SHSI--PVLPTQv----------pADDDSRFVLAVLE-KVGHY----TTLALD 65  castor bean
EEF30193      46 TDKYTNFMSSLREKLKSN-VV------SYNI--PVLPYNl----------pVTSDNRFALVILt-SSGST----TTIALD 101 castor bean
EEF32950      16 ANKYTDFLKKLRGTLKSSA--------SHSI--PVLPTKl----------sVTSSKRFVLLILK-SSKST----ITIALD 70  castor bean
XP_002521642  48 ESVYSTFINNLRKQLQSGAES------YL-I--PLLRSQv----------pVTSDQRFILAQLSn-PQRS----TTLLID 103 castor bean
XP_002514418  45 PYTYRLFIQQLRDLLAEDGSV------SHSI--PVLPTNv----------pATSDRRFVLVILE-EVGNY----TNLALD 101 castor bean
XP_002459593  59 PDKYKSFIASVRAGLVSTAAEaagtntSGGI--PVLVSEd----------dPLALEASLNITLVnKAGRS----VSLKMD 122 sorghum
2PQI_A        70 MDNLYLVGFRT--P-G-GVWWEFGKDGDT--HLLg-------DN--PRWLGFGGRYqd---liG-----NKGLETVTMGR 126 Zea mays
Q9KZ40       111 ASNLYLVGFKS--R-T-GQAYLFSDASAN--AREevgrevrgAP--VTTLPFAGSYtslvntlP-----GAETEPTTIGI 177 Streptomyces co...
Q32GM1        95 RNNLYVTGFVN--R-TnNVFYRFADFSHV--TFPg-------TT--AVTLSGDSSYttl-qrvA-----GISRTGMQINR 154 Shigella dysent...
XP_002516360 110 VINAYLVGFKVdeT-N-SYYFNDIVNDVY--DANp------lKTtkKTKLPFGGSYpal-ensG------AFREQVPLGI 172 castor bean
XP_015577395  66 GTNANIVGFSI--EtD-SYFFKDVADNIY--ASPlf----dnTY--KTRLPFGSSYdsl-eaeG------AYRENTTLGT 127 castor bean
EEF30193     102 VINAYVLGFKV--G-KkSYFFSDVSNEIY--GSKlf----sdTT--KARLPYGGSYqal--ynA-----GASRENVPLGI 163 castor bean
EEF32950      71 VINAYVLGFQV--G-KkSYFFKDIAEDIY--ESKlf----ngTT--KARLPYGGSYqdl--fnA-----GANREKVPLGI 132 castor bean
XP_002521642 104 VINVYLLGFRA--G-DySYYFNDTSNDIYnlHPLq------aKN--KARLPFNSSYpal-enyG------AFREQTTLGI 165 castor bean
XP_002514418 102 VISANIVGFSAe-R-Y-SYFFKDVPDDIY--ASPlf----lgTH--KTRLPFGGSYgsl-edeG------AYRESTTLGS 163 castor bean
XP_002459593 123 ISGAYIAGYEA------GNFSCLVKRSG---------------S--GHTLSSVTCYrssypwgGpptvdVAVPEVSAWRV 179 sorghum
2PQI_A       127 AEMTRAVNDLAKKKK----MLEPQADTKSKLVKLVVMVCEGLRFNTVSRTVDAGFNSQHGv--tLTVTQGKQVQKWDRIS 200 Zea mays
Q9KZ40       178 YAIQTNMEALARTPNpaaaTGAYRGSIARAMLIMIGAFAEAARFPMFRDHFEAAFRRFANpsvvVTPTMQALRTAWGQMS 257 Streptomyces co...
Q32GM1       155 HSLTTSYLDLMSHSG-----TSLTQSVARAMLRFVTVTAEALRFRQIQRGFRTTLDDLSGrsyvMTAEDVDLTLNWGRLS 229 Shigella dysent...
XP_002516360 173 TQLNDAVFTLYKYAT----SAATANQAARSLLVAVQMVSEAARFKYIEQVLVDNFFYLDTe----rGDLVSLENNWKDLS 244 castor bean
XP_015577395 128 YPLNDAASKLYAYHS----N--NTIDIAPSLLVIIQMVSEAARFQYIEGMLFDNFNVGLD----PKCDMLSLEDNWYVIS 197 castor bean
EEF30193     164 SQFNNAIFQLVKYA-----GAPATTDIASNLVVVIQMISEAARFKYIEEKLVENFYEDLY----PKGDLLSLENNWGTLS 234 castor bean
EEF32950     133 SQLNNAIFQLIKY-V----SSPSTTDIASNLLVVIQMISEAARFKYIEKKLVEKFNEDLY----PKGDLLSLENNWGALS 203 castor bean
XP_002521642 166 TQLNEAVFTFNKFAT----HEVTAAQVAHYVLVAIQMVSEAARFKYIEDQLVDDFFYLDPk----rGDLISLQNKWEDIS 237 castor bean
XP_002514418 164 GPFNDAATQLYAYHW------DNTIDIAPSLLVAIQMISEAARFTYIEQELFDIYV--AGl--vPKCDILSLQDNWSTLS 233 castor bean
XP_002459593 180 EDLDEAISSLFLFPT----GNATKEDLSRGLAACDVMVATAATFPYVERRMSAGMWDGNGv--sNDGSLRGLQESWPDLS 253 sorghum
2PQI_A       201 KA 202 Zea mays
Q9KZ40       258 RW 259 Streptomyces coelicolor
Q32GM1       230 SV 231 Shigella dysenteriae Sd197
XP_002516360 245 DA 246 castor bean
XP_015577395 198 IA 199 castor bean
EEF30193     235 EA 236 castor bean
EEF32950     204 IA 205 castor bean
XP_002521642 238 FA 239 castor bean
XP_002514418 234 NA 235 castor bean
XP_002459593 254 AA 255 sorghum
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