5CIR,2O0O,5BNQ,4MXW,1TNR,3QD6,4HT1,2X29


Conserved Protein Domain Family
TNF

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pfam00229: TNF (this model, PSSM-Id:333942 is obsolete and has been replaced by 425540)
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TNF(tumor Necrosis Factor) family
Statistics
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PSSM-Id: 333942
Aligned: 36 rows
Threshold Bit Score: 98.5199
Created: 14-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5CIR_A  41 SWESSRS--GHSFLSNLHLRNG--E--LVIHEKGFYYIYSQTYFR----FQ--EEikenTKNDKQMVQYIYKYT-SYPDP 107 human
O97605 138 QWAPKGY--YTISSNLVTLENG--Kq-LAVKRQGLYYIYAQVTFC----SN--RE----ASSQAPFIASLCLHSpS-GSE 201 domestic cat
O43508 132 GWEEARI--NSSSPLRYNRQIG--E--FIVTRAGLYYLYCQVHFD-----E--GK----A---VYLKLDLL------VDG 185 human
P32971 114 SWNKDGI------LHGVRYQDG--N--LVIQFPGLYFIICQLQFL-----V--QC----PNNSVDLKLELLINKh--IKK 170 human
P32972 119 SWNEDGT------IHGLIYQDG--N--LIVQFPGLYFIVCQLQFL-----V--QC----SNHSVDLTLQLLINSk--IKK 175 house mouse
P41274 165 NWHSQDGagSSYLSQGLRYEED--KkeLVVDSPGLYYVFLELKLSp--tFT--NT----GHKVQGWVSLVLQAKpQVDDF 234 house mouse
P41273 108 SWYSDPGlaGVSLTGGLSYKED--TkeLVVAKAGVYYVFFQLELRrvvaGE--GS----G--SVSLALHLQPLRsA-AGA 176 human
3QD6_A  27 QWAEKGY--YTMSNNLVTLENG--Kq-LTVKRQGLYYIYAQVTFC----SN--RE----ASSQAPFIASLCLKSpGR-FE 90  human
4HT1_T  37 GWEEARI--NSSSPLRYNRQIG--E--FIVTRAGLYYLYCQVHFD--------------EGKAVYLKLDLL------VDG 90  human
2X29_A  29 SWYSDPGlaGVSLTGGLSYKEDtkE--LVVAKAGVYYVFFQXELR----RVvaGE----GSGSVSLALHLXPLRsAAGAA 98  human
5CIR_A 108 ILLMKSA-R-NSCWSKDAEY---GLYSIYQGGIFELKENDRIFVS--VT--NEHLIDM-D----HEASFFGAFLV 168 human
O97605 202 RVLLRAA-NaRSSSKPC------GQQSIHLGGVFELHPGASVFVN--VT--DPSQVSH-G----TGFTSFGLLKL 260 domestic cat
O43508 186 VLALRCL-EeFSATAASSLGp--QLRLCQVSGLLALRPGSSLRIR------TLPWAHL-Ka--aPFLTYFGLFQV 248 human
P32971 171 QALVTVC-E-SGMQTKH------VYQNLSQFLLDYLQVNTTISVN--VD--TFQYIDT-St--fPLENVLSIFLY 230 human
P32972 176 QTLVTVC-E-SGVQSKN------IYQNLSQFLLHYLQVNSTISVR--VD--NFQYVDT-Nt--fPLDNVLSVFLY 235 house mouse
P41274 235 DNLALTV-ElFPCSMENKLVdrsWSQLLLLKAGHRLSVGLRAYLHgaQD--AYRDWEL-Sy---PNTTSFGLFLV 302 house mouse
P41273 177 AALALTV-DlPPASSEAR-----NSAFGFQGRLLHLSAGQRLGVH--LHteARARHAW-Ql--tQGATVLGLFRV 240 human
3QD6_A  91 RILLRAA-N-THSSAKPC-----GQQSIHLGGVFELQPGASVFVN--VT--DPSQVSH-Gt----GFTSFGLLKL 149 human
4HT1_T  91 VLALRCLeE-FSATAASSLGp--QLRLCQVSGLLALRPGSSLRIR--T----LPWAHLkAa---PFLTYFGLFQV 153 human
2X29_A  99 ALALTVD-L-PPASSE--AR---NSAFGFQGRLLHLSAGQRLGVH--LH--TEARARH-AwqltQGATVLGLFRV 161 human
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