4WAP,3QOY


Conserved Protein Domain Family
Ribosomal_L1

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pfam00687: Ribosomal_L1 (this model, PSSM-Id:334211 is obsolete and has been replaced by 459905)
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Ribosomal protein L1p/L10e family
This family includes prokaryotic L1 and eukaryotic L10.
Statistics
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PSSM-Id: 334211
Aligned: 673 rows
Threshold Bit Score: 60.9744
Created: 14-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4WAP_5        12 VKELA----TAKFDETVEVHAKL-GIDPRRsDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKI 86  Thermus thermop...
A0C603         2 LTERK----KRNFKETTELQIQLrDYDVQK-DKRFQGSTRLLHAPYPNIKIGVIGNLTHCDQAKALGLTAIDQDGLKKFN 76  Paramecium tetr...
Q8SRY5        25 LKESE----DPEKIVTIQIQVNLkGFDPRK-DNKVSKDMVLPYRVRSLDKTIVIADEAHVKVCIDANLPYVPIDEISGDD 99  Encephalitozoon...
XP_004029769  17 LTERK----KREFSETIELQIGLrDYDPEK-DKRFSGSIKLPNMPYPNKRVAIIGTMKHCDEAKAANIAYIDVEGLKKFN 91  Ichthyophthiriu...
XP_821884     17 LTNRK----ERKFKESIDLQVNLkNYDPQK-DKRFSGSVRLPHVCRPRMTVCLLCDLVHEDIAKKNNVPTMNQEELKKLN 91  Trypanosoma cru...
XP_001699807  16 LVEGAkt-kPRKFQETVELQIGLkNYDPQK-DKRFSGSVRLPFVPRPRMRVCVLGDVKHCEQAGAIGVDAKGVEDLKKLN 93  Chlamydomonas r...
XP_001611450  16 ILTQSqe-kKRNFVETVELQISLkDYDTQR-DKRFSGTVVLQNVPRERMKICVFGDQVHCDQAKSLGIDYIDLEGLKKFN 93  Babesia bovis T2Bo
CDP98964      17 LKASKe--kKRKFRETVELQVALkNYDPQK-DKRFSGSVRLKNIPRPNMKVCVLGDQQHCDEANANSIPCMNADELKKLN 93  Brugia malayi
XP_004993850  16 LLKHSlkdkKRKFRETVELQVMLkNYDPSR-DKRFSGTVRLPGIARPGMKVCVLGDDAHCDEAKAADIPCMDVDSLKKLK 94  Salpingoeca ros...
XP_002668965  17 LTDKN----KRKFVQTVDLQIKLkNYDPSK-DKRFNGSLKLPNYVKKNLKVCILGDHNHCERAKELGIPFKTVDDLKNTN 91  Naegleria grube...
4WAP_5        87 l------dGWMDFDAVVATPDVMGAVGSkLGRILGPRGLLPNPK-AgTVGFNIGEIIREIKAgRIEFRn-DKTGAIHAPV 158 Thermus thermop...
A0C603        77 kekkpikkWCKPFDILIASESLMKVIPRlVGNVFTKIGKFPIAIpE---TESVSSKVNEVKS-SVKFQl-KNTLSLGTAF 151 Paramecium tetr...
Q8SRY5       100 kkdi-resVLKKNKFFILCPGYNKIYQ--LKNILRC-GKTPHIL-R--NGDDINAVFETGKK-SCKLRiqDDFSVTSFTV 171 Encephalitozoon...
XP_004029769  92 kdkklikkWSKPFDTLICSESLMKQVPRlLGNTLNKIGKFPISItE---GESVVSKVKELQQ-TVKFQl-KKVICLATAV 166 Ichthyophthiriu...
XP_821884     92 knkklvkkMCNQYDAFLCSESIIKTVPRlVGPHMHRVGKFPTVC-A--MSESLPEKVLEIQS-TVKFQl-KKVLCLGTCV 166 Trypanosoma cru...
XP_001699807  94 knkklvkkLAQAYHAFLASDSVIKQIPRlLGPGLNKAGKFPAPI-N----KNLEEMVLDTKC-SIKFQl-KKVLCMGVAV 166 Chlamydomonas r...
XP_001611450  94 rnktlvkkLANKYGAFLASQTLLPQIPRfLGPGLNKAGKFPTQLtH---NDNMEEKVREIKS-SVKFQl-KKVLCMGVAV 168 Babesia bovis T2Bo
CDP98964      94 knkklikkLAKGYDAFLASEALIKQIPRiLGPGLNKAGKFPSVVaH---SEPLITKIEEIRS-TIKFQm-KKVLCLSVAI 168 Brugia malayi
XP_004993850  95 knkklvkkLAKQYDAFLASSKLLKQLPRiLGPGLNKAGKFPSPVsH---EEKLPEKVDELKA-TVKFQm-KKVLTLGVAI 169 Salpingoeca ros...
XP_002668965  92 knkkivkkLADSYDAFLASDSLIKRIPRlLGPGLSKAGKFPLVLg--Q-NDDIPAKIEELKK-TVKFQl-KKEINLATAI 166 Naegleria grube...
4WAP_5       159 GKASFPPEKLADNIRAFIRALEAHKPEGakGTFLRSVYVTTTMGP 203 Thermus thermophilus HB8
A0C603       152 GTDEMSEDQLRQNLSTTINFLVSLLKKG--WQNVGTLHIKTSMGK 194 Paramecium tetraurelia
Q8SRY5       172 GHTGMDSEHIYENIKVGMGLLVSYLKNG--SQNLKGVMIKTDQSP 214 Encephalitozoon cuniculi GB-M1
XP_004029769 167 GTDKLTEEQIRQNINMSINFLVSLLKKG--WQNIKTLHIKTTMSK 209 Ichthyophthirius multifiliis
XP_821884    167 GHVEMTEDQVRQNTVMAINFLVSLLKKN--WQNLKSAYIKSTMGK 209 Trypanosoma cruzi strain CL Brener
XP_001699807 167 ANVGMTEGEIRTNIMYAINFLVSLLKKN--WQNVRCLYIKSTMGK 209 Chlamydomonas reinhardtii
XP_001611450 169 GNVEMTHEQLRANIVLAINYLVSLLKKN--WHNVRGLTVKSTMGK 211 Babesia bovis T2Bo
CDP98964     169 GHVGMTPEELVSNIALSINFLVSLLKKN--WQNVRSLHIKSTMGP 211 Brugia malayi
XP_004993850 170 GHVDMSEEELITNSIQAVNFLVSLLKKN--WQNVRSLNIKSTMGP 212 Salpingoeca rosetta
XP_002668965 167 GNVEMPEEEVQQNVTIALNFLVSLLKKN--WQNVGAANIKATMGK 209 Naegleria gruberi strain NEG-M
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